Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0678 ATGCCTTCATGGTGGGGGAAATCGTCATCGAAAGAAACCAAGAAGAAAGCAACTAAGGAAAGTTTTATTGATGCATTTCACCGGAAATTTAAAATCCCATCTGAAGGTAAACCAAGCAGTAGATCTGGAGGATCACGGAGACATTGCAATGACTCAATTTCAGAGAAAGGGGCTCAGTCTCCTTCTGAGTCAAGATCTCCGTCACCTTCCAAAGTGGCAAGGTGTCAAAGTTTTGCTGAAAGGCCTCATGCTCAGCCACTACCCCTTCCTTGCCTGCACCCATCAAGTTTAAGCCGAGCAGATTCTGAAATTAGCATATCTTCCAAAGCAAGACTTGAAAAGGTCTCCAAACCATCGTTATTTCTTCCACTACCAAAACCTGCATGCATGCGTGGCAGACTGAACCCTGCAGATTTGGATGGAGATCTGGTCACCGCTTCAGTCTCTAGTGAGAGCTCTGCTGATAGTGATGAACCAGTGGACTCTCGCAATCGTAGTCCCCTGGCAACTGACTCTGAGACTGGGACTAGAACTGCTGCAGGCAGTCCTTCCAGCTTGATGCCTAAGGATCAATCAAGTACTATTTCCCAAGTAAATTCAAGAGAAGCCAAAAAGCCAGCAAACATTCTGGGTAATCATATGTCTTCTACTTCACCAAAACGGAGGCCTCTAAGCAACCATGTTCCAAATCTGCAGATTCCTCCCCATGGTGCTTTCTGTAGTGCTCCTGACAGTTCCAGGTCAAGTCCGTCAAGAAGTCCATTGAGAGCATTTGGCACAGAACAGGTGTTGAACTCTGCTTTTTGGGCTGGAAAGCCATATTCAGAGGTCAATTTAGGTGGATCTGGACACTGCTCAAGTCCAGGTTCTGGACACAATTCTGGGCATAATTCAATGGGAGGGGACATGTCTGGACAGTTATTTTGGCAACCAAGCAGGGGTAGCCCTGAATATTCACCTATACCTAGCCCTAGAATGACTAGCCCTGGTCCAAGCTCTAGAATTCAGAGTGGAGCTGTTACACCTATTCATCCCAGAGCTGGGGGAACACCCACTGAATCACAGACAGGATGGGTTGATGACGGAAAACAACAGAGTCATCGATTGCCCCTTCCTCCCTTAGCAGTTACCAATTCTTTGCCTTTCTCTCATTCAAATTCTGCAGCAACATCTCCATCTATGCCAAGAAGTCCAGGAAGAGCAGATAATCCAATAAGCCCTGGATCACGCTGGAAAAAAGGAAAGCTGCTTGGCAGAGGCACATTTGGACATGTCTATGTTGGTTTTAATAAGGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTAACTCTGTTTTCAGATGATGCCAAATCTAAAGAAAGTGCTAAGCAATTAATGCAGGAAATTACCTTGTTAAGCCGATTACGACACCCAAATATTGTGCAGTATTATGGTTCTGAAACAGTAGACGACAAGCTTTACATATACCTGGAATATGTAGCAGGAGGCTCCATATATAAACTGCTTCAAGAATATGGACAGTTTGGTGAACTAGCTATTCGTAGTTTTACTCAACAAATTTTGTCTGGACTTGCGTATTTACATGCTAAAAATACTGTCCATAGGGACATCAAAGGAGCAAATATACTGGTAGATACCAATGGCCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAGCATATAACGGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAGGTTATAAAGAACTCTAATGGTTGCAACCTTGCTGTTGATATATGGAGTCTTGGATGTACAGTTTTGGAAATGGCTACAACTAAACCTCCTTGGAGTCAATATGAAGGGGTTGCTGCTATGTTCAAGATTGGTAATAGCAAGGAACTCCCAACAATTCCAGATCATCTCTCTAGTGAAGGAAAGGATTTTGTTAGGAAATGTCTGCAACGAAATCCACAAAATCGCCCTCCAGCCAGTGAATTATTGGACCACCCTTTTGTAAAATGTGCTGCTCCTTTAGAAAGACCTATCCTGGGTCCTGAAGCTTCAGATCAGTCATCTGGGGTCACACAAGGGGCAAAGGCTCTGGGCATTGGACAAGGAAGGAATCTTTCTGCATTGGATTCGGATAGATTGGCTCTTCATTCCTCTAGGGTTTTGAAAACTAATCATCATGCGAGTGAAATCCATATTCCAAGGAATATATCTTGCCCGGTCTCTCCCATTGGAAGCCCACTGTTGAGGTCAAGATCACCACAGCATATGAGTGGGAGAATGTCTCCCTCTCCTATATCTAGCCCTCGGACTGCTTCTGGTGCCTCCACACCTCTAAATGGTGGTAGTGGTGCTATTCCATTTAGCAATCACTTAGTTTACATTCAGGAGGGTCTTGGGAACCTGCCAAAGTCCTTAAACAGTGGCTACGCTAGTGGCTCTGCTCATCATGACTCAAATGTTGACATTTTTCGAGGAATGCAAAAGACCTCTCACATTACATCAGAACTGGTTCCAAGTGAAAATGATGTTCTTGGGAAGCATTTTGCAAGGCCTCCTCATAATGAGCCATACGATGTTCAATCAATCTTGGCTGATCGCGTCTGCCGGCAGCTGCTGGGGGAACATGTAAAGATTAACCCATCCCTTGATCTGAGTCCCAACTCGTCTTTACTCAGCCGAGCAAATGGTTTATGA 2691 0.4478 MPSWWGKSSSKETKKKATKESFIDAFHRKFKIPSEGKPSSRSGGSRRHCNDSISEKGAQSPSESRSPSPSKVARCQSFAERPHAQPLPLPCLHPSSLSRADSEISISSKARLEKVSKPSLFLPLPKPACMRGRLNPADLDGDLVTASVSSESSADSDEPVDSRNRSPLATDSETGTRTAAGSPSSLMPKDQSSTISQVNSREAKKPANILGNHMSSTSPKRRPLSNHVPNLQIPPHGAFCSAPDSSRSSPSRSPLRAFGTEQVLNSAFWAGKPYSEVNLGGSGHCSSPGSGHNSGHNSMGGDMSGQLFWQPSRGSPEYSPIPSPRMTSPGPSSRIQSGAVTPIHPRAGGTPTESQTGWVDDGKQQSHRLPLPPLAVTNSLPFSHSNSAATSPSMPRSPGRADNPISPGSRWKKGKLLGRGTFGHVYVGFNKESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSETVDDKLYIYLEYVAGGSIYKLLQEYGQFGELAIRSFTQQILSGLAYLHAKNTVHRDIKGANILVDTNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSSEGKDFVRKCLQRNPQNRPPASELLDHPFVKCAAPLERPILGPEASDQSSGVTQGAKALGIGQGRNLSALDSDRLALHSSRVLKTNHHASEIHIPRNISCPVSPIGSPLLRSRSPQHMSGRMSPSPISSPRTASGASTPLNGGSGAIPFSNHLVYIQEGLGNLPKSLNSGYASGSAHHDSNVDIFRGMQKTSHITSELVPSENDVLGKHFARPPHNEPYDVQSILADRVCRQLLGEHVKINPSLDLSPNSSLLSRANGL* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0678 896 Pfam Protein kinase domain 412 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0678 896 MobiDBLite consensus disorder prediction 378 397 - -
Apr6g0678 896 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 812 - -
Apr6g0678 896 MobiDBLite consensus disorder prediction 284 412 - -
Apr6g0678 896 MobiDBLite consensus disorder prediction 742 780 - -
Apr6g0678 896 MobiDBLite consensus disorder prediction 210 225 - -
Apr6g0678 896 MobiDBLite consensus disorder prediction 165 203 - -
Apr6g0678 896 MobiDBLite consensus disorder prediction 115 255 - -
Apr6g0678 896 ProSiteProfiles Protein kinase domain profile. 411 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0678 896 MobiDBLite consensus disorder prediction 27 103 - -
Apr6g0678 896 Gene3D Transferase(Phosphotransferase) domain 1 409 687 - -
Apr6g0678 896 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 812 - -
Apr6g0678 896 MobiDBLite consensus disorder prediction 1 20 - -
Apr6g0678 896 MobiDBLite consensus disorder prediction 27 53 - -
Apr6g0678 896 MobiDBLite consensus disorder prediction 746 780 - -
Apr6g0678 896 CDD STKc_MEKK1_plant 410 667 - -
Apr6g0678 896 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524
Apr6g0678 896 SMART serkin_6 411 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0678 896 SUPERFAMILY Protein kinase-like (PK-like) 409 755 IPR011009 -
Apr6g0678 896 MobiDBLite consensus disorder prediction 348 362 - -
Apr6g0678 896 MobiDBLite consensus disorder prediction 284 313 - -
Apr6g0678 896 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0678 Apr-Chr6 10249705 10257647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0678 1 888 MAP Kinase Kinase Kinase AT1G63700 60.762 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Apr6g0678 Pkinase 1.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0678 K20717 - gmx:100792783 1543.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0678 6 10249705 10257647 Apr6g0678 6 10249705 10257647 ECH
Apr6g0678 6 10249705 10257647 Apr8g2170 8 32244705 32253206 PCT