Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0648 ATGGCGCGGCAAATGCATCATCCTCCTCGTTCTGAAAGTACTCGTACAAGAGACACTAACATCGCTCAGTCTAATCTTGACACAATGGTGTCACGTTCAGAGAATACAATGAACGTAGATTCCCATTATTTACTGGCTCACGACAATGTCATGATGCACGGAATTCACAGTCAATATGATCGTCATATGGGAGCTCCAGCTGCTGCCTCTACATATTGTCGTGACATGAATCCTTCGTCTAGTACTGCTGTGTCTCGAAATCCCAGAACCGCTGATCAGTTATTGTCAGGTTCAAGCACATTCACAGTCCCTGGAACATGCAAAAATTCTGTTGGAACCAGAGCAAATAATCAACATTTCAATGTTTGTTCTTCAACAGGTCCTCGTAATGCAAGACACGCGGAAAATGGAATTCCTTTGCCACCACGTTCTAGTTCGTGGAGAAGATCAGATGAGCCTCTTCTGGTGCATGACCATGGAATTCCTTTGCCACGGCATTCTAGTTCGTGGGTAAGATCAGATGAGCCTCTTATGGTGCATGAGCATGACCATGGAATTCCTTTGCCACGGCATTCTAGTTCGTGGGGAAGATCAGATGAGCCTCTTATGGTGCATGACCATGGAATTCCTTTGCCATCACATTCTAGTTCGTGGGGAAGATCAGATGAGCCTCTTATGATGCATGACTATGGAATTCCTTTGCCATCACATTCTAGTTCGTGGGGAAGATCAGATGAGCCTCTTATGGTGCATGATCATCATGGAATTCCTTTGCCACCGCATTCTAGTTCGTGGAGAATATCAGATGAGCCTCTTGTGGTGCATGACCATGGAATTCCTTTGCCACCAGATGAGTCTCTTATGGTGCATGACCATGGAATTCCTTTGCCACCGCATTCTGGTTCGTGGGGAAGATCAGATGATCCTCTTATGGTGCATGACCATGGAATTCCTTTGCCATCGCATTCTAGTTCGTGGAGAAGATCAGATGAGCCTCTTACGGTGTATGACCATAACCATTCAATTACAGGAAACTATTCAGGGCTGCACTTAAATCCACCTCCTCTCCCTAGATTGGCTCAACAGCTGAACAGCAATAATAATATTGGTCATTCTTTGGCTTGGAATCAGTCTCTTCCAATACTCTTTTTACAAGTTCCCAATGCTAATGGACATTCATTAGAGAATACAAATATGGGTCTGCAGAGATATCAGGATACATCTAGCATCGGAAATGGTCTAAGATTTCCCTACCCTGCTCCGGTCAACCCGCACTATTGTACCTTTGATTATCAAATGCAGCCTGTGCAAGAGAGGAGAGGTCACTCCGTCAACTTGCATCCTCCTCCAGTAACTGCAGCTTCACGCAGAGTTCCAACAAATCCTTTAAGCAGTGCTCAAATTCCCATACAAAATGTGTCACGTGCTCAAAGGATGACTGCTCAAATTCTTCCTCCCAGGCTTCAAAACCTTCCTCCCAGACTTCAAACTCTTCCTCCCATGGTCTTTCTCCAAATTGAGGATATTGCTATGCTGGTTGACCATCACAGTGATATGCGCTTGGATACTGAGCACATGTCTTATGAGGAGCTTCTTGCATTGGGTGAGCAAATTGGCAATGGAAACACAGGTTTATCCGAGGAAACAATCACAAATCAAATCAAGACAAGAACTTATTTACTACCTATTAACTCAGAGGAGGCAGATTCTGATGAACAAGAGGCTGATATTTGCGTCATATGTCAGGATGAATACAAGAACCAAGATACGATTGGAATTCTTCAATGTGGGCACGAATATCATTCAGATTGTATAAGGAATTGGTTGGTTGTGAAAAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCTTTAGAAAAGGAGGGTGTATAA 1896 0.4393 MARQMHHPPRSESTRTRDTNIAQSNLDTMVSRSENTMNVDSHYLLAHDNVMMHGIHSQYDRHMGAPAAASTYCRDMNPSSSTAVSRNPRTADQLLSGSSTFTVPGTCKNSVGTRANNQHFNVCSSTGPRNARHAENGIPLPPRSSSWRRSDEPLLVHDHGIPLPRHSSSWVRSDEPLMVHEHDHGIPLPRHSSSWGRSDEPLMVHDHGIPLPSHSSSWGRSDEPLMMHDYGIPLPSHSSSWGRSDEPLMVHDHHGIPLPPHSSSWRISDEPLVVHDHGIPLPPDESLMVHDHGIPLPPHSGSWGRSDDPLMVHDHGIPLPSHSSSWRRSDEPLTVYDHNHSITGNYSGLHLNPPPLPRLAQQLNSNNNIGHSLAWNQSLPILFLQVPNANGHSLENTNMGLQRYQDTSSIGNGLRFPYPAPVNPHYCTFDYQMQPVQERRGHSVNLHPPPVTAASRRVPTNPLSSAQIPIQNVSRAQRMTAQILPPRLQNLPPRLQTLPPMVFLQIEDIAMLVDHHSDMRLDTEHMSYEELLALGEQIGNGNTGLSEETITNQIKTRTYLLPINSEEADSDEQEADICVICQDEYKNQDTIGILQCGHEYHSDCIRNWLVVKNVCPICKSEALTPLEKEGV* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0648 631 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 321 627 IPR045191 GO:0061630
Apr6g0648 631 SUPERFAMILY RING/U-box 571 625 - -
Apr6g0648 631 MobiDBLite consensus disorder prediction 1 20 - -
Apr6g0648 631 CDD RING-H2_TTC3 578 619 - -
Apr6g0648 631 ProSiteProfiles Zinc finger RING-type profile. 578 619 IPR001841 -
Apr6g0648 631 MobiDBLite consensus disorder prediction 126 147 - -
Apr6g0648 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 555 623 IPR013083 -
Apr6g0648 631 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 321 627 - -
Apr6g0648 631 Pfam Ring finger domain 577 619 IPR001841 -
Apr6g0648 631 SMART ring_2 578 618 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0648 Apr-Chr6 9458476 9461064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0648 501 623 C3H Transcription Factor Family AT2G15530 48.800 3.22e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0648 K19041 - gmx:100779069 366.696