Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr6g0623 | ATGGCTTCGGATCTTGAAGTGAAAGCCAAAGAGGCTTTCGTTGAAGATCACTTCGAACTCGCTGTGGAACTTCTTACTCAGGCCATTGATCTCGAACCAAACAAAGCTGAACTCTATGCGGACCGTGCACAAGCCAACATCAAACTCGGAAACTTCACTGAGGCTGTTGCGGATGCAAACAAGGCAATTCAGTTGAATCCTTCTCTGCCAAAAGCATATTTGCGCAAAGGTACTGCATGCATGAAGCTTGAGGAATACCAGACTGCAAAGGCTGCTCTGGAGATGGGTGCTTCATTGTCTCCAGACAAATCAAGATTTGATAATTTGATCAAAGAATGTGATAAGCTCATTGCAGAAGAATCTTATACCATACCTATACAGGAAAAGACTGCAGCACAGGACGTTACTCCAAAAGATGTTAAGCCAGAGGACAATCTTCCAGAGAAGCCAACTGTGGCAGTGACTAAACCTAAATATAGGCATGAATTCTACCAGAAACCTGATGAGCTTAGTGTTAGCATTAATGTCCCTGGAGAAGATGCATATGTTTTTCAACCTCGCTTATTTGGAAAGATCATACCTTCCAGATGCCGGTATGAAGTTTTGTCCACCAAAATTGAAATTCGCCTTGTGAAAGCAGAACCTATTCACTGGACGTCACTAGAATTCACCAGAGACGTTGCAGTTGTCCAGAGGGTTAATGCTTCTTCAGTTACTGGAAGTCATAGACCTTCTTACCCATCCTCAAAAGCAACAAGAGTAGATTGGGATAAGCTTGAAGCTGAAGTCAAGAAAGAGGAGAAAGATGAAAAGCTTGATGGCGATGCGGCATTGAACAAATTTTTCCGGGAAATATATCAAGATGCAGATGAGGATACTAGAAGAGCAATGAAAAAGTCATTTGTGGAGTCTAATGGAACAGTGCTTTCTACAAACTGGAAAGAAGTGGGATCCAAGAAGGTTGAGGGAAGTCCTCCTGATGGCATGGAGTTGAAGAAATGGGAATATTAG | 1011 | 0.4253 | MASDLEVKAKEAFVEDHFELAVELLTQAIDLEPNKAELYADRAQANIKLGNFTEAVADANKAIQLNPSLPKAYLRKGTACMKLEEYQTAKAALEMGASLSPDKSRFDNLIKECDKLIAEESYTIPIQEKTAAQDVTPKDVKPEDNLPEKPTVAVTKPKYRHEFYQKPDELSVSINVPGEDAYVFQPRLFGKIIPSRCRYEVLSTKIEIRLVKAEPIHWTSLEFTRDVAVVQRVNASSVTGSHRPSYPSSKATRVDWDKLEAEVKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY* | 337 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr6g0623 | 336 | SUPERFAMILY | HSP20-like chaperones | 147 | 228 | IPR008978 | - | |
| Apr6g0623 | 336 | CDD | p23_CS_SGT1_like | 154 | 222 | - | - | |
| Apr6g0623 | 336 | Gene3D | - | 153 | 224 | IPR008978 | - | |
| Apr6g0623 | 336 | ProSiteProfiles | CS domain profile. | 124 | 222 | IPR007052 | - | |
| Apr6g0623 | 336 | Gene3D | Tetratricopeptide repeat domain | 1 | 144 | IPR011990 | GO:0005515 | |
| Apr6g0623 | 336 | Pfam | Tetratricopeptide repeat | 71 | 102 | IPR019734 | GO:0005515 | |
| Apr6g0623 | 336 | ProSiteProfiles | TPR repeat profile. | 36 | 69 | IPR019734 | GO:0005515 | |
| Apr6g0623 | 336 | Pfam | SGS domain | 255 | 334 | IPR007699 | - | |
| Apr6g0623 | 336 | PANTHER | PROTEIN SGT1 HOMOLOG | 1 | 169 | IPR044563 | GO:0051087 | |
| Apr6g0623 | 336 | PANTHER | PROTEIN SGT1 HOMOLOG | 170 | 336 | IPR044563 | GO:0051087 | |
| Apr6g0623 | 336 | SUPERFAMILY | TPR-like | 6 | 111 | IPR011990 | GO:0005515 | |
| Apr6g0623 | 336 | SMART | tpr_5 | 2 | 35 | IPR019734 | GO:0005515 | |
| Apr6g0623 | 336 | SMART | tpr_5 | 36 | 69 | IPR019734 | GO:0005515 | |
| Apr6g0623 | 336 | SMART | tpr_5 | 70 | 103 | IPR019734 | GO:0005515 | |
| Apr6g0623 | 336 | Pfam | CS domain | 167 | 212 | IPR007052 | - | |
| Apr6g0623 | 336 | PANTHER | PHOSPHATASE-RELATED | 1 | 169 | - | - | |
| Apr6g0623 | 336 | PANTHER | PHOSPHATASE-RELATED | 170 | 336 | - | - | |
| Apr6g0623 | 336 | Pfam | Tetratricopeptide repeat | 36 | 68 | IPR013105 | - | |
| Apr6g0623 | 336 | ProSiteProfiles | SGS domain profile. | 245 | 336 | IPR007699 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr6g0623 | Apr-Chr6 | 9079987 | 9087377 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr6g0623 | 1 | 115 | U-box Gene Family | AT3G07370 | 27.731 | 5.78e-07 | 48.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr6g0623 | K12795 | - | gmx:100780174 | 562.762 |