Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0612 ATGGAACAGAAACACGTTCTGTTGTCAGCATTGAGTGTCGGAGTTGGGTTAGGTGTGGGGCTTGGGTTCAGTTCAGGACAGAAATGGGTTGGAGGGAATCGTAACTCTGATGAGGTTTCCGGGGAGCAGATTGTGCAAGAGCTCAAGAAACTGGTGGTTGAAGGAAAGGACAGCAAGGTTACATTTGATGAGTTTCCTTATTACTTAAGTGAAAGAACTCGAGTATTGTTGACAAGTGCTGCATATGTTCATTTAAAACATCTCCACTTCTCCAAGCACACCAGGAATCTCTCACCAGCAAGCAGGGCTATTTTGCTTTCGGGTCCGGCAGAACTTTACCAGCAAATGCTTGCCCGAGCATTAGCACATTACTTTGAATCGAAGTTGCTCTTGTTAGATATTACTGACTTCTCTGTGAAGTTGCAAAGCAAATTTGGATGTTCTAGAAAAGAAACATCTTTCAAAAGGTCAATATCCGAGGTGACTTTGGAGCGGATGTCTGGTTTGTTTGGTTCCTTTTCAATGCTGCCTCCAACAGGTGAATCTAAAGGAATTCTGCGTCAACAAAGCAGTGCTGTTGAAAGTTCCAATCCTCCAAAGCTTAGGAGGAATGCCTCTGCTGCATCTGATATAAGTAGCACTGCTTCTCAGTGTGGTCCAACACTTCAAGCTCCTTTGAAGCGGACAAGTAGCTTATGTTTTGATGAAAAGGTCTTCGTTCAGTCCCTTTACAAGCTTTTGGTTTCTATCACAGAAACTAGTTCCATCATTTTATACATCAGGGATGTTGAGAAGCTTGTTCTCCAATCACCAAGATTATATAATTTATTACAAAAAATGATAAAGAAACTGGCAGGCTCAGTGTTAATACTTGGTTCCCAGATAATAGATTCAGAAGATGATTACACAAAAGTTGATGAAAGACTCACAACGCTATTCCCATACAAAATTGAGATCAAACAACCTGAAGATGAAGCTCATTCTGGCAGTTGGAAAGGCCAGCTGGAAGAGGACATGAAAGTTATTCAGTTCCAAGATAACAGAAACCACATTGCTGAAGTACTCACAGCAAATGACATTGACTGTGATGACTTGAACTCAATCTGCCATGCAGACACTATCTTACTCAGCAATTATATTGAAGAAATTGTGGTATCTGCAATATCTTACCATTTAATGCATACCAAGGATCCAGAATACCGAAATGGAAAGCTAGTTATATCAGCCAATAGTTTGTCCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGAATCTAACAAGGAAAATGCTGGAGAAGATATTACTGGTGCAAAGAATGATGTACGGTGTGACAACCTAGCACCTGAGAACAAAAACGAGGCAGAAAAATCCATCCCTATAATAAAGAAAGAAGGAGAAAATCCTACACCTGTAAAAGCAGAAATTCCTGACAATGAGTTTGAGAAGCGTATCAGACCAGAAGTTATCCCTGCAAATGAGATAGGGGTTACATTTTCTGACATTGGTGCACTGGATGAGATCAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTTAGAAGACCAGACCTTTTCAAAGGTGGACTCCTTAAGCCATGTAGAGGTATATTGCTTTTTGGGCCTCCTGGTACGGGGAAAACAATGCTAGCTAAGGCAATTGCAAATGAAGCCGGAGCAAGTTTCATTAATGTCTCAATGTCCACCATCACATCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTGTTCACACTAGCAGCTAAGGTTGCCCCAACTATTATCTTTGTTGATGAGGTTGACAGCATGCTTGGGCAGAGGACAAGAGTAGGAGAGCATGAGGCCATGAGGAAGATAAAAAATGAATTCATGACACACTGGGATGGGCTATTAACAGGACCTAATGAGCAAATTCTGGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGGCGGTTTGAGCGCAGGATCATGGTTGGTCTTCCATCTGCTGAGAACAGGGAAATGATCCTGAAGACTCTCCTGACTAAGGAGAAACATGAAAACTTAGACTTCCAAGAGCTGGCAACAATGACTGAAGGATATAGTGGAAGTGATCTAAAGAATCTATGCATCACTGCGGCTTATCGACCAGTTAGGGAGCTAATACAGCAGGAGAGAATGAAGGAAGTGGTAGAAAAGAAAAAAAGAGAGGCAGAAGGCCAAAACTCTGAAGATGCTTCAAACAACAAAGATAAAGAAGAGCATGAAATTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAAAGTCAGGTGGCTGCAAGTTTTGCTTCGGAAGGATCAGTGATGAATGAGCTGAAGCAGTGGAATGATTTATATGGAGAAGGAGGTTCGAGGAAGAAGCAGCAGCTCACTTACTTCCTTTAG 2457 0.4184 MEQKHVLLSALSVGVGLGVGLGFSSGQKWVGGNRNSDEVSGEQIVQELKKLVVEGKDSKVTFDEFPYYLSERTRVLLTSAAYVHLKHLHFSKHTRNLSPASRAILLSGPAELYQQMLARALAHYFESKLLLLDITDFSVKLQSKFGCSRKETSFKRSISEVTLERMSGLFGSFSMLPPTGESKGILRQQSSAVESSNPPKLRRNASAASDISSTASQCGPTLQAPLKRTSSLCFDEKVFVQSLYKLLVSITETSSIILYIRDVEKLVLQSPRLYNLLQKMIKKLAGSVLILGSQIIDSEDDYTKVDERLTTLFPYKIEIKQPEDEAHSGSWKGQLEEDMKVIQFQDNRNHIAEVLTANDIDCDDLNSICHADTILLSNYIEEIVVSAISYHLMHTKDPEYRNGKLVISANSLSHGLSLFQEGKSSGNLKTNESNKENAGEDITGAKNDVRCDNLAPENKNEAEKSIPIIKKEGENPTPVKAEIPDNEFEKRIRPEVIPANEIGVTFSDIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTGPNEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLTKEKHENLDFQELATMTEGYSGSDLKNLCITAAYRPVRELIQQERMKEVVEKKKREAEGQNSEDASNNKDKEEHEITLRPLNMEDMRQAKSQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0612 818 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 818 - -
Apr6g0612 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 753 IPR027417 -
Apr6g0612 818 Pfam ATPase family associated with various cellular activities (AAA) 544 674 IPR003959 GO:0005524|GO:0016887
Apr6g0612 818 ProSitePatterns AAA-protein family signature. 647 666 IPR003960 GO:0005524|GO:0016887
Apr6g0612 818 Gene3D - 503 675 IPR027417 -
Apr6g0612 818 CDD AAA 542 675 - -
Apr6g0612 818 MobiDBLite consensus disorder prediction 422 446 - -
Apr6g0612 818 Coils Coil 729 752 - -
Apr6g0612 818 Pfam AAA+ lid domain 696 737 IPR041569 -
Apr6g0612 818 MobiDBLite consensus disorder prediction 183 219 - -
Apr6g0612 818 Gene3D - 676 748 - -
Apr6g0612 818 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 818 - -
Apr6g0612 818 MobiDBLite consensus disorder prediction 740 763 - -
Apr6g0612 818 MobiDBLite consensus disorder prediction 182 219 - -
Apr6g0612 818 SMART AAA_5 540 677 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0612 Apr-Chr6 8858015 8865928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0612 468 735 Calmodulin-binding Proteins AT3G56690 36.462 2.86e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0612 - - gmx:100804099 1427.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0612 6 8858015 8865928 Apr6g0612 6 8858015 8865928 ECH
Apr8g2144 8 32059712 32066994 Apr6g0612 6 8858015 8865928 PCT