Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0606 ATGGAGGAGTTTTGGAGCATGGTTTGTGGGGATTCTGATACTTGTGGAGAGAGAGCAAAGCCTTTGTGTTATGATTTCAAGTTTTTGAAAGATCCTTCCTCTTGCATCAACCACTTGCTGATCATTTGCTGTGATGTGTTGCTGCTGATAGTATTATCTTTAGTTATGATCCACAAGTCTTTGTTGAGACCATTTCGGTGTCAGTTCCGTATGCAAAGATATTCAAACTTGCAACTAGTTTCTACCATAATCAATGGCTCCCTTGGGTTGTTACATTTGTGCTTAGGCATTTGGGTTTTAGAGGAGAAATTAAGGAAAAGTCACACTGCGTTTCCTCTTGATCTGTGGTTGCTAGAACTCTGTCAAGGATTCACATGGTTGTTATTAGGCTTAACTATAAGTCTTCACCTGAAAAAACTTTCAAGAGCATGTTTGTGGCTGTTTTCTATTCTTCTATTCTTTGTTTCTGCCATTTTCTGTGCTATATCTTTATGTTATGCAATTAACAATAAGGAACTGTCATTCAAGATAGCTTTAGATGTTCTGTCTTTTTCAGGAGCAGTTTTACTACTTTTATGCACATATAAAGTATGTAAAGACAGTAATGGAGAAATTGATGAAAGTCTTTATGATCCTATAAATAGCCAATTCAATGAAGTTGATTTTGGTGGCCATGTGACCCCATTTTCCAAAGCTGGATTCTTCAGTAAGATGTTGTTTTGGTGGTTGAATCCATTGATGAAAAAGGGTCAAGAAAAAACTCTCCAAGATGAGGATATCCCAAAGTTGGGGGAATCAGATAGAGCAGAAAGTTGCTATTTGTCATTTGTAGAACAATTGAACAGAAAAAAACAAAAAGAACCATTATCACAGTCATTTGTTTTGCGGACAATAGTTTTGTGCCACTGGAGAGAGATTTTGACGTCAGGATTGTTTGCATTGCTCAAGGTGCTCACCTTGTCTACTGGTCCTGTACTTTTGAATGCATTTATATTGGTTGCTGAGGGTAATGAAAGTTTCAAATATGAGGGTTATGTATTGGTCATATCACTTTTCTTTATAAAGATCATAGAATCCCTTTCACAAAGGCAATGGTATTTTCGTTGTAGAGTTGTTGGGATGAAAGTTAGATCATTACTTACAGCAGCCATTTATAAAAAACTATTGAGGTTATCCAATGCAGCTAGATTGACACACTCTGGAGGTGAGATAATGAATTACGTGACTGTGGATGCTTATAGAATTGGTGAATTTCCATTTTGGTTCCATCAAACATGGACGACAAGTCTCCAACTATGTATTGCATTAGTAATACTTTTTCAAGCTATTGGGATAGCAACAGTTGCCTCATTGGTGGTGATAGTTCTCACTTTGCTTTGCAATACTCCACTAGCAAAGTTGCAACACAAGTTTCAAAGTGAACTTATGGTAGCACAAGATGAGAGATTGAAGGCCAGTTCTGAGGCTCTTGTGAATATGAAAGTGTTGAAGCTATATGCATGGGAAACTCATTTTAAAAATGCTATAGAAAGGTTAAGAAATGTGGAACTCAAATTTTTAGGTGCAGTGCAATTGAGAAAGGCCTACAATATCTTTCTATTTTGGACCGCACCTATATTGGTCTCTTCTGCTTCTTTCGTGGCATGCTACTTTTTGAAAATTCCTTTACATGCAAGTAATGTGTTCACTTTTGTGGCAACTTTGCGCCTTGTCCAAGAGCCAATTACAGCCATCCCAGATGTTATTGGGGTGGTCATTCAAGCAAAAGTTGCATTTGCCAGGATCGTTAAATTCCTTGAGGCACCTGAACTGCAAAGTGAAAATTTTAGGAACAAGTGTTTTGACGATAGTGTTAAAGGCTCAGTTTTAATCAAATCCGCTGACTTTTCGTGGGAAGGCAATGTATCGAAGCCAACACTAAGGAACCTAAACTTGGAGGTACGACATGGGCAAAAGTTGGCAATTTGTGGAGAAGTTGGGTCAGGAAAATCAACTCTCTTAGCTACAATTCTTGGAGAAGTTCCAATGATAAAAGGAACTATTGAAGTTCATGGTAAGTTTGCATATGTTTCTCAAACAGCATGGATACAAACAGGTACTATACGGGAAAATATTTTGTTTGGATCTGAGCTAGATGCTCAAAGGTATAAAGAAACACTTCAAAGATCTTCACTACTGAAGGACCTTGAGTTGTTACCACATGGTGACCTCACAGAAATAGGTGAAAGAGGAGTTAATTTAAGTGGAGGTCAGAAACAAAGAGTTCAACTTGCACGTGCCTTTTATCAAAATGCTGATGTATATCTTTTGGATGATCCATTCAGTGCTGTTGATGCACACACTGCTACTAGTTTGTTTAATGAATATATCATGGAAGGACTCAAAGGGAAAACTGTCTTGCTAGTGACTCATCAAGTTGACTTCCTGCCAGCATTTGACCTTGTTTTGTTGATGTCAGATGGGGAAATTCTGGAAGCTGCTCCTTATCATCATTTATTGACCACAAGCCAAAAGTTCCAAGATCTTGTAAATGCGCACAAGGAAACTGCTGGCTCTGACAATCCTGTGAATGATACTTATTCCCAGAGACATTCAACTTCTGCTAGAGAGATTACACAAGCTTTCATGGAGAAGAAGTTCAAAGCAGAAAATGGAAATCAATTAATAAAGCAAGAAGAGAGAGAGATAGGAGACAAAGGGTTAAGGCCATACTTACAGTATCTGAATCAGATGAAAGGCTATATTTACTTCTTTGTGGCTTCCCTTTGCCACCTTATGTTTGTTATTTGCCAAATATTGCAAAATTCATGGATGGCTGCTAATGTTGATAATCCACATGTCAGCACATTGCGGTTGATTTTAGTTTACTTCTTGATTGGAGCTGTTTCTACAATTTTCTCAATGACCAGAGGTTTGCTAGTGGTTGCTTTGGGTATGCAATCATCAAAATATTTATTTTTACAGTTAATGAACTCCCTTTTTCGTGCACCAATGTCTTTTTATGACTCTACACCATTGGGAAGGATACTTAGTAGGGTCTCTTCAGATCTAAGTATTATGGATATTGATCTCCCATTTATCCTCACTTATGCTGTGGGAGGTACTATCAATTTTTATTCCAATCTCACAGTTTTAGCAGTTGTCACTTGGCAAGTATTGATAATCTCTGTACCGATGATTTATGTTGCAATTCGATTGCAGAGATACTATTTTGCTACTGCAAAAGAAGTAATGCGCATGAATGGCACAACAAAATCCTTTGTAGCAAATCATGTAGCTGAAACCACTGCTGGAGCTGTGACAATAAGAGCCTTTGAGGAAGAAGATCGTTTTTTTTATAAGAATCTTGATCTAATTGATATCAATGCTAGTCCTTTCTTCCATAGTTTTGCTTCAAATGAATGGTTGATCCAAAGATTAGAAATAGTTAGTGCAGTACTTCTTGCCTCTGCAGCACTTTTCATGGTTATGCTTCCACCTGGGACATTCACCTCTGGATTTATTGGGATGGCTCTCTCATATGGCCTTTCACTAAATGCTCAGCTAGTATTTTCAATTCAAAGTCAATGCAATATTGCTAATTACATGATATCAGTAGAGAGGCTAAATCAATATATGCATATACCAAGTGAGGCCCAAGAAGTAATAGAAGGAAATCGTCCTCCTTTGAGTTGGCCTGTTGCAGGCAAAGTAGAACTAAATGACTTAAAGATAAGATACAGGCCTGATGGACCACTTGTTCTTGATGGTATCACATGCACGTTCAAAGCAGGACACAAGATTGGAATTGTTGGTAGGACAGGTAGTGGGAAGTCCACTCTTATAGGTGCTTTATTTCGCCTAGTGGAGCCTGCAGGTGGAAAAATTATAGTTGATGGCATAGACATCTCTTCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGTGTTATTCCTCAAGATCCTACCCTTTTTAATGGGACAGTTAGATATAACATGGACCCTTTATCTCAACACTCTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAATTGAAAGAAGTTGTCCAAGAGAAAGAAGAGGGTTTAAACTCGTCAGTTGTTGAAGATGGATCAAATTGGAGCATGGGACAAAGGCAATTGTTTTGTTTGGGGCGTGTCCTTTTGAGGAGAAGTAGGATACTGGTGTTGGATGAAGCAACTGCATCAATTGACAATGCAACTGATTTGATTCTACAGAAAACAATTAGAACTGAATTTGCAGATTGTACAGTGATCACAGTAGCACACAGGATACCAACTGTGGTGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAATTGGTGGAGTATGATGAACCAATGTGCTTGATGAAGAGAGAAGGATCGTTATTCAGGGAACTTGTTAAGGAATATTGGTCTCATTTTCAATCTGCAGAATCACATTGA 4434 0.3818 MEEFWSMVCGDSDTCGERAKPLCYDFKFLKDPSSCINHLLIICCDVLLLIVLSLVMIHKSLLRPFRCQFRMQRYSNLQLVSTIINGSLGLLHLCLGIWVLEEKLRKSHTAFPLDLWLLELCQGFTWLLLGLTISLHLKKLSRACLWLFSILLFFVSAIFCAISLCYAINNKELSFKIALDVLSFSGAVLLLLCTYKVCKDSNGEIDESLYDPINSQFNEVDFGGHVTPFSKAGFFSKMLFWWLNPLMKKGQEKTLQDEDIPKLGESDRAESCYLSFVEQLNRKKQKEPLSQSFVLRTIVLCHWREILTSGLFALLKVLTLSTGPVLLNAFILVAEGNESFKYEGYVLVISLFFIKIIESLSQRQWYFRCRVVGMKVRSLLTAAIYKKLLRLSNAARLTHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTSLQLCIALVILFQAIGIATVASLVVIVLTLLCNTPLAKLQHKFQSELMVAQDERLKASSEALVNMKVLKLYAWETHFKNAIERLRNVELKFLGAVQLRKAYNIFLFWTAPILVSSASFVACYFLKIPLHASNVFTFVATLRLVQEPITAIPDVIGVVIQAKVAFARIVKFLEAPELQSENFRNKCFDDSVKGSVLIKSADFSWEGNVSKPTLRNLNLEVRHGQKLAICGEVGSGKSTLLATILGEVPMIKGTIEVHGKFAYVSQTAWIQTGTIRENILFGSELDAQRYKETLQRSSLLKDLELLPHGDLTEIGERGVNLSGGQKQRVQLARAFYQNADVYLLDDPFSAVDAHTATSLFNEYIMEGLKGKTVLLVTHQVDFLPAFDLVLLMSDGEILEAAPYHHLLTTSQKFQDLVNAHKETAGSDNPVNDTYSQRHSTSAREITQAFMEKKFKAENGNQLIKQEEREIGDKGLRPYLQYLNQMKGYIYFFVASLCHLMFVICQILQNSWMAANVDNPHVSTLRLILVYFLIGAVSTIFSMTRGLLVVALGMQSSKYLFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDIDLPFILTYAVGGTINFYSNLTVLAVVTWQVLIISVPMIYVAIRLQRYYFATAKEVMRMNGTTKSFVANHVAETTAGAVTIRAFEEEDRFFYKNLDLIDINASPFFHSFASNEWLIQRLEIVSAVLLASAALFMVMLPPGTFTSGFIGMALSYGLSLNAQLVFSIQSQCNIANYMISVERLNQYMHIPSEAQEVIEGNRPPLSWPVAGKVELNDLKIRYRPDGPLVLDGITCTFKAGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNMDPLSQHSDQEIWEVLGKCQLKEVVQEKEEGLNSSVVEDGSNWSMGQRQLFCLGRVLLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVVDCTMVLSISDGKLVEYDEPMCLMKREGSLFRELVKEYWSHFQSAESH* 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0606 1477 Pfam ABC transporter transmembrane region 915 1155 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr6g0606 1477 Pfam ABC transporter transmembrane region 308 569 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr6g0606 1477 Gene3D - 1215 1466 IPR027417 -
Apr6g0606 1477 Gene3D - 598 869 IPR027417 -
Apr6g0606 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 587 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr6g0606 1477 SUPERFAMILY ABC transporter transmembrane region 295 600 IPR036640 GO:0005524|GO:0016021
Apr6g0606 1477 CDD ABCC_MRP_domain1 622 822 - -
Apr6g0606 1477 Pfam ABC transporter 1248 1396 IPR003439 GO:0005524
Apr6g0606 1477 Pfam ABC transporter 640 774 IPR003439 GO:0005524
Apr6g0606 1477 ProSitePatterns ABC transporters family signature. 747 761 IPR017871 GO:0005524
Apr6g0606 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 845 IPR027417 -
Apr6g0606 1477 Gene3D ABC transporter type 1, transmembrane domain 878 1213 IPR036640 GO:0005524|GO:0016021
Apr6g0606 1477 CDD ABCC_MRP_domain2 1229 1449 - -
Apr6g0606 1477 Gene3D ABC transporter type 1, transmembrane domain 295 597 IPR036640 GO:0005524|GO:0016021
Apr6g0606 1477 SMART AAA_5 1257 1440 IPR003593 -
Apr6g0606 1477 SMART AAA_5 649 822 IPR003593 -
Apr6g0606 1477 CDD ABC_6TM_ABCC_D2 917 1206 IPR044726 GO:0140359
Apr6g0606 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1194 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr6g0606 1477 SUPERFAMILY ABC transporter transmembrane region 905 1211 IPR036640 GO:0005524|GO:0016021
Apr6g0606 1477 CDD ABC_6TM_ABCC_D1 309 595 IPR044746 GO:0140359
Apr6g0606 1477 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 70 1477 - -
Apr6g0606 1477 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 70 1477 - -
Apr6g0606 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 845 IPR003439 GO:0005524
Apr6g0606 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1231 1465 IPR003439 GO:0005524
Apr6g0606 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1221 1464 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0606 Apr-Chr6 8718679 8725440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0606 616 878 Calmodulin-binding Proteins AT2G36910 29.787 6.34e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0606 K05666 - gmx:100787314 2447.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0606 6 8718679 8725440 Apr6g0606 6 8718679 8725440 ECH
Apr6g0606 6 8718679 8725440 Apr8g2133 8 31935167 31943251 PCT