Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0605 ATGCTGTCATTTGTTATGATTCGGAAGTCTTCGTTGAGATTGTTTCGGGTGGCAAGTTATTCAAGCTTGCAGCTAGTTTCAGCTATAATCAGTGGCATTGTTGGGTTATTGCATTTGTGCTTAGGTATTTGGGTTTTAGAGGAGAAGTTAAGGAAAACCCACAATGCTTTTCCACTTAGTTGGTGGTTGCTTGAATTTTTTCAGGGATTCACATGGTTATTAGTAGGTTTGAATGTAAGTCTTCGGCTGAAACAACTTCCAAGAGCATGGCTGTGGCTGTTTAGTGTTCTTATATTCTTTGTTTCTGGTTTTCTCTGTGCTTTATCCATATTTTACACAATTAGTAGCAGAGAACTGTCCCTCAAGGCAGCTTTAGATGTTCTATCTCTTCCTGGAGCAATTTTTCTACTCTTATGCACATACAATGCGAGTAAATATGAAGACAATGATAAAGACATTGGTGAAAGTCTTTATGCCCCTTTAAGTGGCCAATTGAATGAAGTTGATCCTAGTAGCTATGTAACCCCATTTGCCAAAGCTGGATTGTTTAGTAGGATTTCATTTTGGTGGTTGAGTCCATTGATGAAAAGGGGTCAAGAGAAAACACTTCAGGATGAGGATGTCCCAAAGGTGCAGCACTCACATGGAGCAGAAAGTTGCTATTTTTCATTTGTAGATCAATTGAACAGGCAGAAACAAAAGGAACCGTTGTCACAGCCATCAGTTCTATGGGCAATAATTTTGTGCCATTGGAGAGAGATTTTGATATCAGGACTTTTTGCATTGCTCAAGGTACTCACTCTGTCTTCTGGTCCTTTACTACTGAATGCCTTTGTATTGGTCTCTGAGGGTAATGGAAGTTTCAAATATGAAGGATATGTATTGGCTATCTCACTTTTATTTACCAAGATCATAGAATCCATATCACAAAGGCAGTGGTACTTTCGTTGCAGAATTATTGGTATGAAAGTTAGGTCACAACTTACTGCAGCCATTTATAAAAAGCAACTGAGATTATCCACTGCTTCTAGATTGATTCACTCTGGTGGTGAGATAATGAATTATGTGACTGTAGATGCTTATAGGATTGGAGAATTTCCATTTTGGTTTCACCAGACGTGGACAACAGTTGTCCAACTATGTATTGCATTGGTAATTCTTTTTCGTGCAGTTGGGCTAGCAACATTTGCCTCATTGATTGTGATTGTTCTCACAGTGCTTTGCAATACTCCACTAGCAAAGTTACAGCATAAGTTTTTGACCAAGCTTTTGGTGGCACAGGATGAAAGATTGAAAGCTAGTTCTGAGGCTCTAGTGAATATGAAAGTGTTGAAGTTATATGCATGGGAAATCCATTTTAAGAATGCTATAGAAAGATTAAGAAATGTGGAACTCAAATGGTTATATTCAGTGCTATTACAAAAAGCATACAACATCATTCTCTTTTGTAACCTTTTTACTTTTGTGGCAACTTTACGCCTTGTGCAAGATCCGATTTCAATCATCCCGGACGTAATTGGGGTGATCATTCAAGCAAAAGTTGCATTTGCACGGATTGTAAAGTTCCTTGATGCACCGGAACTGCAGAGTGCTAATGTCAAGAAAAGTTGCTTTAATGAGAAGCTTAAGGGTTCAATTTTTATCAAATCTGCAGACTTTTCATGGGAATATAATGTATTGAAACCAACACTGAGAAACATAAATTTAGAGGTTAAACCTGGGCAAAAGATTGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACTCTCTTGGCAGCAATTCTTGGAGAAGTTCCTAATACAAAAGGAAATATTACAGTTTATGGGAAGTTTGCTTATGTTTCTCAAACGGCATGGATACCAACAGGAACAATACAGGAAAATATTCTGTTTGGATCGTCTTTGGATGTTCAAAGGTATGAAGAGACACTTCATAGGTCTTCACTAGTGAAGGACCTTGAGTTGTTTCCCCAGGGTGATCTCACTGAAATAGGTGAGAGAGGAGTTAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCCCGTGCTCTTTATCAGGATGCTGATATATATATCTTGGATGATCCATTTAGTGCTGTTGATGCACATACAGCCACCAATTTGTTTAATGAATACATATTAGAAGGTCTTGCAGGGAAGACAGTGTTACTAGTGACTCATCAAGTTGACTTTCTCCCAGCATTTGATTCTGTTTTATTGATGTCAGATGGGAAAATCCTACAAGATGCTCCTTATCATCAATTACTGACCTTAAGCCAAGAATTTCGGGACCTTGTCAATGCTCACAAAGAGACTGCTGGTTCTAGTCAGCTTGCAGATGTTACTTCTCCCCAAATATCTTCAAATTCTGGTAGAGAGATCAGACAATCTCTTATAGAGAAGGAATTTAAAGCATTAAATGGTGATAAATTAATTAAGCAAGAAGAGAGAGAAACAGGAGACACAGGGTTGAAGCCTTATTTACAGTATCTGAATCACAACAGAGGTTATATATACTTCTGTGTGGCTTCTCTTTCTCACCTTTTGTTTGTGATATGTCAAATATTGCAAAACTCATGGATGGCTGCTAATGTTGAAAATCCCCAAGTCTCATTAGATTTGAGCATTGTGGACCTTGATATACCCTTTGGCCTCACTTATGCTGTGGGAGCTACTATAAGTTGCTATGCTGATCTTACAGTTTTATCAGTCGTCACTTGGCAAGTCTTGTTTATCTCTATACCAATGGTGTATGTTGTAATCCGCTTGCAGAGACACTACTTTGCTGCTGCAAAAGAATTTATGCGGATGAATGGCACAACAAAATCCTTAGTAGCTAATCATGTAGCTGAAACTGTTGCTGGAGCAATGACAATAAGGGCTTTTGAGGAGCAAGATCGGTTTTTTGAGAAGAATCTCAATCTAATTGACACCAATGCAAGTCCTTTCTTCCATAGTTTTGCCTCAAACGAGTGGTTGATCCTACGGTTAGAAACAGTCTGTGCAATTATTCTTGCCTCCACAGCACTTTGCATGGTTGTGCTTCCACCTGGGACATTAACCTCTGGATTTATTGGCATGGCCCTTTCTTATGGCCTTTCACTAAATGCTTCCTTAGTATATTCAATTCAAAGTCAATGCATTCTATCAAATCAAATAATATCCGTAGAGAGGCTAAATCAGTATATGCATATACCAAGTGAAGCCCAAGAGGTGATAGAAGGAAATCGTCCTTCAGATAATTGGCCAGTTGCAGGCAAAGTAGAATTACAAGATTTGAAGATTAGATACAGGCCTGAAGGGCCACTTGTACTGCATGGTATCACTTGCACATTTGAAGGAGGGCACAAGATTGGTATAGTTGGTAGGACAGGCAGTGGAAAGTCCACTCTTATAGGTGCTTTATTTCGTCTTGTGGAGCCTGCAGGAGGAAAAATTGTAGTTGATGGCATAGACATATCTTCTATTGGCCTTCATGATTTAAGATCACGTTTCGGTATTATACCTCAGGACCCTACCCTTTTCAATGGGACAGTTAGATATAATTTGGATCCTTTATCTCAACATTCTGATCAAGAGATATGGGAGGTTCTCGGCAAGTGTCAGTTGCGAGAAGCAGTCCAGGATAAAGAAGGTGGCTTAGACTCCTCAGTTGTTGAAGATGGATCAAACTGGAGCATTGGACAAAGGCAATTATTCTGTTTGGGCCGCGCCCTTTTGAGGAGAAGTAGGATACTGGTGCTGGATGAGGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACAATTAGGACTGAGTTTGCAAATTGTACAGTAATCACTGTAGCCCATAGGATACCCACCGTGATGGACTGCACTATGGTTCTTGCCATCAGTGATGGAAAATTGGCGGAGTATGATGAGCCAATGAACCTGATGAAGAATGAAAAATCATTGTTTGGGCAGCTTGTAAAGGAATATTGGTCTCATTTTCAGTCTGCTGAATCACATTGA 4008 0.394 MLSFVMIRKSSLRLFRVASYSSLQLVSAIISGIVGLLHLCLGIWVLEEKLRKTHNAFPLSWWLLEFFQGFTWLLVGLNVSLRLKQLPRAWLWLFSVLIFFVSGFLCALSIFYTISSRELSLKAALDVLSLPGAIFLLLCTYNASKYEDNDKDIGESLYAPLSGQLNEVDPSSYVTPFAKAGLFSRISFWWLSPLMKRGQEKTLQDEDVPKVQHSHGAESCYFSFVDQLNRQKQKEPLSQPSVLWAIILCHWREILISGLFALLKVLTLSSGPLLLNAFVLVSEGNGSFKYEGYVLAISLLFTKIIESISQRQWYFRCRIIGMKVRSQLTAAIYKKQLRLSTASRLIHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTVVQLCIALVILFRAVGLATFASLIVIVLTVLCNTPLAKLQHKFLTKLLVAQDERLKASSEALVNMKVLKLYAWEIHFKNAIERLRNVELKWLYSVLLQKAYNIILFCNLFTFVATLRLVQDPISIIPDVIGVIIQAKVAFARIVKFLDAPELQSANVKKSCFNEKLKGSIFIKSADFSWEYNVLKPTLRNINLEVKPGQKIAICGEVGSGKSTLLAAILGEVPNTKGNITVYGKFAYVSQTAWIPTGTIQENILFGSSLDVQRYEETLHRSSLVKDLELFPQGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYILDDPFSAVDAHTATNLFNEYILEGLAGKTVLLVTHQVDFLPAFDSVLLMSDGKILQDAPYHQLLTLSQEFRDLVNAHKETAGSSQLADVTSPQISSNSGREIRQSLIEKEFKALNGDKLIKQEERETGDTGLKPYLQYLNHNRGYIYFCVASLSHLLFVICQILQNSWMAANVENPQVSLDLSIVDLDIPFGLTYAVGATISCYADLTVLSVVTWQVLFISIPMVYVVIRLQRHYFAAAKEFMRMNGTTKSLVANHVAETVAGAMTIRAFEEQDRFFEKNLNLIDTNASPFFHSFASNEWLILRLETVCAIILASTALCMVVLPPGTLTSGFIGMALSYGLSLNASLVYSIQSQCILSNQIISVERLNQYMHIPSEAQEVIEGNRPSDNWPVAGKVELQDLKIRYRPEGPLVLHGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQEIWEVLGKCQLREAVQDKEGGLDSSVVEDGSNWSIGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFANCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMNLMKNEKSLFGQLVKEYWSHFQSAESH* 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0605 1335 Pfam ABC transporter 564 698 IPR003439 GO:0005524
Apr6g0605 1335 Pfam ABC transporter 1106 1254 IPR003439 GO:0005524
Apr6g0605 1335 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 871 1335 - -
Apr6g0605 1335 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 32 872 - -
Apr6g0605 1335 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 32 872 - -
Apr6g0605 1335 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 871 1335 - -
Apr6g0605 1335 Gene3D ABC transporter type 1, transmembrane domain 226 528 IPR036640 GO:0005524|GO:0016021
Apr6g0605 1335 Gene3D ABC transporter type 1, transmembrane domain 870 1071 IPR036640 GO:0005524|GO:0016021
Apr6g0605 1335 Pfam ABC transporter transmembrane region 878 1030 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr6g0605 1335 Pfam ABC transporter transmembrane region 255 488 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr6g0605 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 540 769 IPR027417 -
Apr6g0605 1335 Gene3D - 1073 1324 IPR027417 -
Apr6g0605 1335 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 548 769 IPR003439 GO:0005524
Apr6g0605 1335 CDD ABCC_MRP_domain2 1087 1307 - -
Apr6g0605 1335 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1089 1323 IPR003439 GO:0005524
Apr6g0605 1335 CDD ABCC_MRP_domain1 548 746 - -
Apr6g0605 1335 SUPERFAMILY ABC transporter transmembrane region 872 1069 IPR036640 GO:0005524|GO:0016021
Apr6g0605 1335 SUPERFAMILY ABC transporter transmembrane region 243 526 IPR036640 GO:0005524|GO:0016021
Apr6g0605 1335 CDD ABC_6TM_ABCC_D1 256 519 IPR044746 GO:0140359
Apr6g0605 1335 SMART AAA_5 573 746 IPR003593 -
Apr6g0605 1335 SMART AAA_5 1115 1307 IPR003593 -
Apr6g0605 1335 CDD ABC_6TM_ABCC_D2 874 1064 IPR044726 GO:0140359
Apr6g0605 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1081 1320 IPR027417 -
Apr6g0605 1335 Gene3D - 544 776 IPR027417 -
Apr6g0605 1335 ProSitePatterns ABC transporters family signature. 671 685 IPR017871 GO:0005524
Apr6g0605 1335 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 255 492 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr6g0605 1335 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 900 1052 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0605 Apr-Chr6 8694827 8704556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0605 519 791 Calmodulin-binding Proteins AT2G36910 27.815 2.68e-22 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0605 6 8694827 8704556 Apr6g0605 6 8694827 8704556 ECH
Apr6g0605 6 8694827 8704556 Apr8g2132 8 31924578 31931186 PCT