Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0601 ATGAACGATTTAATGACCAAATCCTTCACCAACTACGTGGATCTGAAGAAAGCGGCAATGAAAGACGTGGATTTGGAAGCGGGCAATGCTCCACCCGATGTGGAACTAACCTCATCAACGACTCACATGGATACTCACATGGGTCTCTTCTTAAAAGAAGCAGAAAAGGTTAAAACCGAAATGACCCATTTACGCGACATCCTCGGAAAACTCCAACAAGCCAACGAGGAAAGCAAGTCCCTTCACAAACCCGAAGCTTTGAAACAATTGCGTAACAGAATCAACTCAGACATTGTCACAGTGCTGAAAAAAGCACGCGCAATAAGGACCCAATTGGAAGAAATGGACCGTGCCAACGCCTCTAACAGAAGACTCTCAGGGCTCAAAGAAGGGACTCCAGCCATTTACAGAACAAGAATCGCTGTGACCAATGGGTTACGCAAGAAACTGAAGGAGTTGATGATGGAGTTTCAAGGTTTGAGGCAAAGAATGATGAGTGAGTACAAAGACACGGTTGGGAGAAGGGTGTTTACTGTGACAGGGGAATACCCAGATGAAGAAGTTATTGAGAAGATAATTAGCAATGGGAATGAGGAAGAGGTTTTGGGGAAGGCAATAAAGGAGCATGGGAGAGGGAAGGTTCTAGAAACTGTGGTAGAGATTCAGGATAGGCATGATACGGCTAAAGAGGTTGAGAAGAGTTTGTTGGAGCTGCACCAAGTGTTTTTGGATATGGCTGTGATGGTTGAAGTGCAAGGTGAGAAAATGGATGATATTGAGCACCATGTGTTGAATGCTTCGCATTATGTTAAGGATGGGACAAAGAGTCTTCAGAGTGCTAAGGAGTACCAGAGGAGTAGTAGGAAGTGGATGTGTATTGGGATTATACTCATTTTGATTTTGATTCTTGTTATTATTATTCCTGTTGTCACAAGTTTTAGTAGTTCTTAA 951 0.4322 MNDLMTKSFTNYVDLKKAAMKDVDLEAGNAPPDVELTSSTTHMDTHMGLFLKEAEKVKTEMTHLRDILGKLQQANEESKSLHKPEALKQLRNRINSDIVTVLKKARAIRTQLEEMDRANASNRRLSGLKEGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKDTVGRRVFTVTGEYPDEEVIEKIISNGNEEEVLGKAIKEHGRGKVLETVVEIQDRHDTAKEVEKSLLELHQVFLDMAVMVEVQGEKMDDIEHHVLNASHYVKDGTKSLQSAKEYQRSSRKWMCIGIILILILILVIIIPVVTSFSSS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0601 316 SUPERFAMILY t-snare proteins 46 273 IPR010989 GO:0016020|GO:0016192
Apr6g0601 316 ProSitePatterns Syntaxin / epimorphin family signature. 224 264 IPR006012 GO:0005484|GO:0006886|GO:0016020
Apr6g0601 316 CDD SynN 47 205 IPR006011 GO:0016020
Apr6g0601 316 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 309 - -
Apr6g0601 316 Coils Coil 143 163 - -
Apr6g0601 316 CDD SNARE_syntaxin1-like 217 278 - -
Apr6g0601 316 PANTHER SYNTAXIN 4 309 IPR045242 -
Apr6g0601 316 SMART SynN_4 42 169 IPR006011 GO:0016020
Apr6g0601 316 Pfam SNARE domain 255 306 IPR000727 -
Apr6g0601 316 SMART tSNARE_6 213 280 IPR000727 -
Apr6g0601 316 Pfam Syntaxin 50 253 IPR006011 GO:0016020
Apr6g0601 316 Gene3D - 214 313 - -
Apr6g0601 316 Gene3D - 46 176 - -
Apr6g0601 316 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 218 280 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0601 Apr-Chr6 8593693 8594797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0601 1 316 SNARE and Associated Proteins AT1G08560 64.375 4.12e-134 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0601 K08486 - gmx:100816016 524.242