Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0582 ATGGAGAATGATATGGAGGCTGTGCAATGGTGCAACATATGCTCCAAAATGGTTCACCCAATGACTAATGCTGAGAACAAGTGCCCATTTTGTGAGACAGAATTTTGTGAGGTAATGGACAACCTAAGGGACCAGAATGATGTTATTGATTTAAGGTCAGCTTGGGTGTTCTCACTTTATGCCCCAATCTTTCTTGGCTTATTGAGTGCTTTTAGCCCTTCTGTAGCAAGCATTTTTTCACAGGGGAGTAGCAGCTCAAGAGGGGAGGAAGAGGTTGAACAAGAGAGGGATAATGAACTTGTTCTTGGTGGAAGGAGAAGCACCTCAACTTACATGATGCAACTTTTCAGGGGTCTTCATGTAAGGATGGTGTCTGAATTTGAGAACCTTGAAGACACTAGGAACATGGATAGTAGTAGTATACTTGTCCTTGATCCATTCAATGAAGGTGCATTGATTGTTAGAGGTCCTAACTTGAACCACACAACTAGTCCAAATGAGAATGTTGTTAGCCCCTTCAATGACATTGTGGTAGGATCTGGCTTTGATTTGTTGCTGCAACATTTGGCACAGATTGGCCCTGGTGGATATACAAGTGTGAACCCTCCAGCACAGAAGGCAGCAATTGAAGCAATGCCTTGTGTGACTAGTGAGGAAAAATTGCAATGTACAGTGTGTTTGGAGGATGTTGACATTGGAAGTGAAGCAACGGAGATGCCTTGTAAGCATAAATTCCATGGTGACTGCATAATCTCATGGCTTAAACTTCATGGTTCTTGTCCAGTTTGCAGGTTTCAGATGCCATCTGATGATTCAACTGTTGAAGCCAATGTGAGGATTGGAAATAGGGACAATCAAAACAGTGAGCTAGTTAGAGCTGGAGAAGAGAGAACAAGAAATGGAAGGAGGACTTGGTTTCCAATGCTGCAGTCATTTAATAATTTTCTTCCTTCACCTTGA 960 0.424 MENDMEAVQWCNICSKMVHPMTNAENKCPFCETEFCEVMDNLRDQNDVIDLRSAWVFSLYAPIFLGLLSAFSPSVASIFSQGSSSSRGEEEVEQERDNELVLGGRRSTSTYMMQLFRGLHVRMVSEFENLEDTRNMDSSSILVLDPFNEGALIVRGPNLNHTTSPNENVVSPFNDIVVGSGFDLLLQHLAQIGPGGYTSVNPPAQKAAIEAMPCVTSEEKLQCTVCLEDVDIGSEATEMPCKHKFHGDCIISWLKLHGSCPVCRFQMPSDDSTVEANVRIGNRDNQNSELVRAGEERTRNGRRTWFPMLQSFNNFLPSP* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0582 319 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Apr6g0582 319 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 2 317 - -
Apr6g0582 319 SMART ring_2 223 263 IPR001841 -
Apr6g0582 319 SUPERFAMILY RING/U-box 215 273 - -
Apr6g0582 319 Pfam Ring finger domain 222 264 IPR001841 -
Apr6g0582 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 270 IPR013083 -
Apr6g0582 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0582 Apr-Chr6 8116053 8117012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0582 141 282 C3H Transcription Factor Family AT1G26800 35.664 1.42e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0582 K11982 - gmx:100790855 532.332