Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0570 ATGGATGTTTGCCATAATGTATCAGTTTCCAGTGAGTGTCAACAAGAGATTCCTACCCTTGATGACCTTTTTTCTGCTCAGAACACGGAAGTGGATTTTGGCATGGAATGGTTGTCAGTGTTTGTGGAGGACTGTTTTTCTAGTAGGCCAAGTTGTCTTTTGGCACCTACTGGTGTTGAAGCTACAAGCACTAGCACCAAACCTTCAAGCACAATGCATAGACCCCAACAAAATCAGTGTCAGTTGCCTAATTTTGCTGTGCCAGGGAAGGCCAGAAGCAAGAGGAAGAGGCTTTCAGCCCCTAGAACCAAGGACACTTTGAACACCTGGTCACAGCATCTGAGCCCAGAAAGTGATGGGTTGGGTGCAGACCCACCTCTTTTGAAACAGGCTTATTGGTTGGCTGATAGTGAACTCATTGTCCCTAACAAGAAGGATGAGTTAGAAGAGGTGACCAAAGTTGGGGAATTGGAAGAGGGGGAGGTCATGGAGAATTCGATTGTGAGGAAGGAGAAATTGGGGGATTGTGAGGTTGAAGTTAAGAACAATAATGATAACAATAACAATGGGCAGCATCCAATTCCAAGAAGGTGCACACATTGTTTGGCTCAGAGGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTTAGCTATTTGCATTCCAATTCACACAAGAAAGTCATGGAGATGAGAATGGGTGCCCTATCATCCATTCCTGCAGAGCACTAG 816 0.4596 MDVCHNVSVSSECQQEIPTLDDLFSAQNTEVDFGMEWLSVFVEDCFSSRPSCLLAPTGVEATSTSTKPSSTMHRPQQNQCQLPNFAVPGKARSKRKRLSAPRTKDTLNTWSQHLSPESDGLGADPPLLKQAYWLADSELIVPNKKDELEEVTKVGELEEGEVMENSIVRKEKLGDCEVEVKNNNDNNNNGQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMGALSSIPAEH* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0570 271 Pfam GATA zinc finger 198 232 IPR000679 GO:0006355|GO:0043565
Apr6g0570 271 SMART GATA_3 192 246 IPR000679 GO:0006355|GO:0043565
Apr6g0570 271 ProSiteProfiles GATA-type zinc finger domain profile. 196 228 IPR000679 GO:0006355|GO:0043565
Apr6g0570 271 Gene3D - 188 258 IPR013088 GO:0006355|GO:0008270
Apr6g0570 271 ProSitePatterns GATA-type zinc finger domain. 198 223 IPR000679 GO:0006355|GO:0043565
Apr6g0570 271 CDD ZnF_GATA 197 244 IPR000679 GO:0006355|GO:0043565
Apr6g0570 271 MobiDBLite consensus disorder prediction 89 122 - -
Apr6g0570 271 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 271 - -
Apr6g0570 271 PANTHER GATA TRANSCRIPTION FACTOR 1 271 - -
Apr6g0570 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0570 Apr-Chr6 7789106 7790494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0570 35 260 C2C2-Gata Transcription Factor Family AT4G32890 38.627 1.14e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr6g0570 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0570 - - gmx:100776805 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0570 6 7789106 7790494 Apr6g0570 6 7789106 7790494 ECH