Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0550 ATGGAAATTCAATTCAAGAAACCAAAGCAGCAATTAAAACAAGGCACATCAAAAGGAGGCAAATTCAAAGGCAAAATCAGGAACAAAAACATTAACAAAAACAAGTATGTTGGGGTGAGACAAAGGCCCTCAGGAAGATGGGTAGCTGAGATCAAAGACACAACACAAAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCAGAAGCAGCAGCAAGAGCTTATGATGAAGCTGCATGTCTTCTTCGTGGATCCAACACTCGCACCAACTTCATCACACACGTGTCCTTCGATTCCCCTCTTGCTTCAAGGATTAAAAATCTTCTCAACAACAGAAAAGGTACCAAACAACAAGAAGAACATGAGGAAGCAATATCTGCCACAAGGGTCAACAGCACCATTAGTAGTGCTAGTAGCAGTTCTAGTAGTACTAGTAGTATAAACTCATCAAATAATGACACTAGTGAAAACTCACTCTCTAGTGAGACAACCACCCACAACACAAAACTATTTGATGATGCTTATAGACCTGATTTGAGCAATTTCATGGAGGAGTCTGAGTCAGGTTCCAAGTCTAATGATCTTTCATGGGGTTTTGGACATGGTTTTGATTCTTTTCCCTTTAGCCAAGCGTTGGATATACCAAACCTGCCTGATACAGCTGGCTTGGAGCTTTCAGAATTTGAAAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTTTATGCAATTAATGGTGTGCAAGAGTACATGGATACTGTTCAAGATTCAAATAATGAAGCTTTCTGGGATCTTCCACCCTTGTGTTCATTTTTCTGTTAA 822 0.3978 MEIQFKKPKQQLKQGTSKGGKFKGKIRNKNINKNKYVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEAAARAYDEAACLLRGSNTRTNFITHVSFDSPLASRIKNLLNNRKGTKQQEEHEEAISATRVNSTISSASSSSSSTSSINSSNNDTSENSLSSETTTHNTKLFDDAYRPDLSNFMEESESGSKSNDLSWGFGHGFDSFPFSQALDIPNLPDTAGLELSEFERMKVERQISASLYAINGVQEYMDTVQDSNNEAFWDLPPLCSFFC* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0550 273 MobiDBLite consensus disorder prediction 1 24 - -
Apr6g0550 273 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Apr6g0550 273 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Apr6g0550 273 MobiDBLite consensus disorder prediction 111 166 - -
Apr6g0550 273 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 259 - -
Apr6g0550 273 MobiDBLite consensus disorder prediction 127 166 - -
Apr6g0550 273 CDD AP2 35 91 IPR001471 GO:0003700|GO:0006355
Apr6g0550 273 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Apr6g0550 273 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Apr6g0550 273 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Apr6g0550 273 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Apr6g0550 273 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 13 259 - -
Apr6g0550 273 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0550 Apr-Chr6 7392659 7393480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0550 8 273 AP2-EREBP Transcription Factor Family AT5G19790 42.049 2.30e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr6g0550 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0550 K09286 - gmx:100782886 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0550 6 7392659 7393480 Apr6g0550 6 7392659 7393480 ECH