Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0549 ATGAACGATCTTCTAACGGAATCGTTTGACATTCCACGTGGTCAAGGTCACAGAGGTGGTGATGTTGAGTTAGGAGAATATGCAATGAATTCAGGAGACCTGGGCTTGGATGGTTTCTTCAAAAAGGTTCAAGAGCTTGATAAACAATATGCTAAACTGGATAAGCTTTTGCAAAAGCTCCAGGTAACCTGTCTTTACACACTTGTGACAACTAATTGCTGGGATGCCCATGATGAGTCCAAATCTGTGACAAAGGCTCCTGCCATGAAGACTATAAAGCAGAGAATGGAGAAAGATGTTGATGAAGTTCAGAAAACTGCACATTATTTAAAGAACAAAATTGAAGAACTGGACAAAGAGAATTTGGCAAACAGGCAGAAGCCTGGGTGTGGAAAAGGATCAGGTGTTGACCGGTCAAGAACAGCAACAACCATTTCATTAAAAAAGAAACTGAAGGATAAGGTGGCAGAATTTCAGGCCCTAAGAGAAGCTATCCATCAAGAATATCGAGATGTTGTTGAGAGACGTGTTTTTACAGTTACTGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCAATCCGGGAACAAGGACGGGGCCAGATAATTGACACCTTGGCAGAAATTCAAGAGCGACATGAAGCAGTTAGAGATGTTGAGAGAAAGCTTCTTGATTTACAACAGATATTTATGGATATTGCGGTGTTGGTTGATGCACAAGGAGACATGCTTGACAACATAGAATCACAGGTTTCAAGTGCGGTGGACCACGTGCAACAAGGCAACAATGCCCTCCAGAAGGCAAAGAAACTACAGAAGAACTCTAGAAAATGGATGTGCATTGCTATCATTATACTTCTCATCGTTATTATAATAATCGTTGTTGGTGTCATCAAACCATGGGTTAGCCAAAAGGGTGCATAG 963 0.4123 MNDLLTESFDIPRGQGHRGGDVELGEYAMNSGDLGLDGFFKKVQELDKQYAKLDKLLQKLQVTCLYTLVTTNCWDAHDESKSVTKAPAMKTIKQRMEKDVDEVQKTAHYLKNKIEELDKENLANRQKPGCGKGSGVDRSRTATTISLKKKLKDKVAEFQALREAIHQEYRDVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIREQGRGQIIDTLAEIQERHEAVRDVERKLLDLQQIFMDIAVLVDAQGDMLDNIESQVSSAVDHVQQGNNALQKAKKLQKNSRKWMCIAIIILLIVIIIIVVGVIKPWVSQKGA* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0549 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 219 281 IPR000727 -
Apr6g0549 320 Gene3D - 33 173 - -
Apr6g0549 320 ProSitePatterns Syntaxin / epimorphin family signature. 225 264 IPR006012 GO:0005484|GO:0006886|GO:0016020
Apr6g0549 320 CDD SNARE_syntaxin1-like 218 280 - -
Apr6g0549 320 SMART tSNARE_6 214 281 IPR000727 -
Apr6g0549 320 Pfam SNARE domain 255 307 IPR000727 -
Apr6g0549 320 Gene3D - 213 312 - -
Apr6g0549 320 PANTHER - 3 312 - -
Apr6g0549 320 Coils Coil 43 63 - -
Apr6g0549 320 Coils Coil 148 168 - -
Apr6g0549 320 Pfam Syntaxin 39 254 IPR006011 GO:0016020
Apr6g0549 320 PANTHER SYNTAXIN 3 312 IPR045242 -
Apr6g0549 320 SMART SynN_4 31 170 IPR006011 GO:0016020
Apr6g0549 320 SUPERFAMILY t-snare proteins 35 274 IPR010989 GO:0016020|GO:0016192
Apr6g0549 320 Coils Coil 93 120 - -
Apr6g0549 320 CDD SynN 36 206 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0549 Apr-Chr6 7372527 7381542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0549 1 320 SNARE and Associated Proteins AT3G03800 70.625 3.66e-155 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0549 K08486 - gmx:100306329 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0549 6 7372527 7381542 Apr6g0549 6 7372527 7381542 ECH
Apr6g0549 6 7372527 7381542 Apr8g1956 8 30177101 30184231 PCT