Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0538 ATGGATAGGCTCATAAGATTAGATCCATCAAACATAGTAATAATGAGAGTTGAACCAGGGCAAAAGTGCCAAGGCAAGATCACCTTACGCAATGTGATGTACACAATGCCAGTGGCCTTCAGACTTCAACCTCTAATCAAAACACGTTACACAGTGAAGCCTCAATCAGGGATCATATCCCCTTTAGCCACAATCGCCATAGAGATCACTTACCTTCTCCCACAAGGCTCCAGTTTCCCTTTATCTTTCCCTCACTCAGATGACACCTTTCTCTTACACAGTGTGCTTGTTCCTGGTGCAGCAATCAAGGAACCTTCTTCCATGTTTGATGCTGTCCCTAATGACTATTTTACCACCAAAAAGAAACAAGTCTTCATAGACAGTGGCATCAAAGTCATGTTTGTGGGGTCACAGATTCTATCCCAACTTGTAGCACATGGTTCAATGGATGAAATAAGAGAAGTACTAGAAAAAAGTGACCCACTATGGAAATCTGTGAACTCCACTGACCCACAAGGCCAAACATTGCTCCACTTGACAATTTCACAAAAAAGACCCGATCTTGTTCAATTGCTCCTAGAATTTGAGCCTGACATAGAAGCAACAAACTGTTCTGGCTCAACCCCACTTGAGGCTGCATCTTCCTCTGGTGAAGCCTTAATAGTTGAGCTTCTTTTGGCTCACAAAGCCAACACAGAACGATCAGAATCTTCCCTCTTTGGTCCAATCCATCATGCAGCAAGAGGAGGGCACGTAGAGGTTCTAAGACTTCTTTTGCTCAAAGGAGCCAAAGTGGACTCACTCACAAGAGATGGTAACACAGCCTTGCACCTTGCAGTTGAAGAACACAGAAGAGACTGTGTAAAACTCTTGCTGGCAAACGGTGCTAATACAAATGTTACAAACTCAAGAGAAGGTGACACCCCTTTACATATAGCGTCGTCATTAGGTGATGAGAGCATAGTCAAGCTCTTGCTCCAGAAGGGTGGTGCTAAAAAGGGTGTGAGAAATGGACAAGGGAAAACAGCATATGATATTGCAGATGAAAATGGGCATGCTCACCTCTTTGATGCTTTGTGTTTAGGGGATAAGTTATGCATAGCTTCAAGGAAAGGTGAAGTGAGGAGCATCCAGAAGCTTCTAGAGAATGGTGCAGGAATCAATGGAAGGGACCAACATGGTTGGACAGCACTGCATAGAGCTTCGTTCAAAGGGAGAGTTGATGCAGTTAAGGTTCTTGTGGAGAGAGGGGTAGACGTTGATGCAAAGGATGAAGAAGGGTACACTGCATTGCACTGTGCTGTTGAATCCGGGCATGCTGATGTGACTGAGCTTTTGGTGAAGAAAGGTGCTGATGTTGAAGCAAGGACTAGTAAGGGTGTGAGTGTGTTGCAAATTGCTGAGTCTTTGCACTATGTGGGGATCACGAGGATTCTTGTGAATGGTGGGGCTTGTAGGGACAATAATGTGGATCATGTACCTTCAGCACTTGTTGCTATTCCTTTTGGGCATAAAATGGAAGTAGGGGGTGTTGTAAAGAAGAAAAAGTTTGGAAGCAGAACCAGAGTGTTGAAGGGTGGTAGCATGGATCGTTCCATGGCTTTGGCTGTGCTCTAA 1617 0.4453 MDRLIRLDPSNIVIMRVEPGQKCQGKITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATIAIEITYLLPQGSSFPLSFPHSDDTFLLHSVLVPGAAIKEPSSMFDAVPNDYFTTKKKQVFIDSGIKVMFVGSQILSQLVAHGSMDEIREVLEKSDPLWKSVNSTDPQGQTLLHLTISQKRPDLVQLLLEFEPDIEATNCSGSTPLEAASSSGEALIVELLLAHKANTERSESSLFGPIHHAARGGHVEVLRLLLLKGAKVDSLTRDGNTALHLAVEEHRRDCVKLLLANGANTNVTNSREGDTPLHIASSLGDESIVKLLLQKGGAKKGVRNGQGKTAYDIADENGHAHLFDALCLGDKLCIASRKGEVRSIQKLLENGAGINGRDQHGWTALHRASFKGRVDAVKVLVERGVDVDAKDEEGYTALHCAVESGHADVTELLVKKGADVEARTSKGVSVLQIAESLHYVGITRILVNGGACRDNNVDHVPSALVAIPFGHKMEVGGVVKKKKFGSRTRVLKGGSMDRSMALAVL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0538 538 ProSiteProfiles Ankyrin repeat profile. 242 270 IPR002110 GO:0005515
Apr6g0538 538 ProSiteProfiles Ankyrin repeat region circular profile. 242 266 - -
Apr6g0538 538 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 538 - -
Apr6g0538 538 Gene3D - 363 508 IPR036770 -
Apr6g0538 538 ProSiteProfiles Ankyrin repeat profile. 393 425 IPR002110 GO:0005515
Apr6g0538 538 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Apr6g0538 538 SUPERFAMILY Ankyrin repeat 165 498 IPR036770 -
Apr6g0538 538 Pfam MSP (Major sperm protein) domain 5 109 IPR000535 -
Apr6g0538 538 ProSiteProfiles Ankyrin repeat region circular profile. 393 425 - -
Apr6g0538 538 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 538 - -
Apr6g0538 538 ProSiteProfiles Ankyrin repeat region circular profile. 205 231 - -
Apr6g0538 538 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Apr6g0538 538 ProSiteProfiles Ankyrin repeat profile. 426 458 IPR002110 GO:0005515
Apr6g0538 538 ProSiteProfiles Ankyrin repeat region circular profile. 305 329 - -
Apr6g0538 538 Pfam Ankyrin repeats (3 copies) 242 302 IPR002110 GO:0005515
Apr6g0538 538 Pfam Ankyrin repeats (3 copies) 167 232 IPR002110 GO:0005515
Apr6g0538 538 Pfam Ankyrin repeats (3 copies) 365 456 IPR002110 GO:0005515
Apr6g0538 538 SUPERFAMILY PapD-like 2 150 IPR008962 -
Apr6g0538 538 ProSiteProfiles Ankyrin repeat region circular profile. 172 203 - -
Apr6g0538 538 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Apr6g0538 538 Pfam Ankyrin repeat 306 331 IPR002110 GO:0005515
Apr6g0538 538 Gene3D - 124 361 IPR036770 -
Apr6g0538 538 SMART ANK_2a 305 335 IPR002110 GO:0005515
Apr6g0538 538 SMART ANK_2a 205 234 IPR002110 GO:0005515
Apr6g0538 538 SMART ANK_2a 393 422 IPR002110 GO:0005515
Apr6g0538 538 SMART ANK_2a 172 201 IPR002110 GO:0005515
Apr6g0538 538 SMART ANK_2a 426 455 IPR002110 GO:0005515
Apr6g0538 538 SMART ANK_2a 238 267 IPR002110 GO:0005515
Apr6g0538 538 SMART ANK_2a 271 300 IPR002110 GO:0005515
Apr6g0538 538 Gene3D Immunoglobulins 1 123 IPR013783 -
Apr6g0538 538 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Apr6g0538 538 ProSiteProfiles Ankyrin repeat profile. 305 329 IPR002110 GO:0005515
Apr6g0538 538 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Apr6g0538 538 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Apr6g0538 538 PRINTS Ankyrin repeat signature 442 456 IPR002110 GO:0005515
Apr6g0538 538 ProSiteProfiles Ankyrin repeat region circular profile. 426 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0538 Apr-Chr6 7098674 7100290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0538 365 469 Ion Channels AT4G32500 33.333 2.73e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0538 - - gmx:100782444 834.713