Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0530 ATGGCAGAAGAAGAAGCCGTTCCGTTAAAACGCCATAACCGGAAAGAGCTTCTTCTTCTGCATGAATGGGCAGAACTTGTGTTACCATATTTAACTCCTTCAGAACTCGCCAACGTCTCTATGACCTGCACAACCCTTCGCCAACTCTCACACTCCATCACTCTCCGCCGCTCCGAAGACGCTTCGAGAACCTTCGAGAACTTTCCAGTCCCATTTCTCAACACCGTCGATCCCTACCCTTACGCCCACTTCCTCTACACCCCTTCCCTCCTTCTCCCCTCCCCACTCCTCTCTCGCCAACCCTGGGGGGCCTCTTCCGTAATTTCACCCTCCGCGCCCATTCAGCTACGCGCTGAATCGGTGAGTCTCGTCCACGCGTCCGGCTGCGACTGCGAATCCTGTGCGGGCTCCGACTGTCCTTGTTTGGCCCTTGATGAGCAGGATGACGTGGGCCGTGAGTGTGGGCCGGGTTGCCGGTGTGGGCTCAAATGTGGGAACCGGTTGACCCGGAATGGGGTCGCGGTTCGGGTGAAGATTGTGAGGGATAAGAGGAAAGGGTGGGGTTTGTGTGCTGACCAGTTCATTCGGAAAGGGGAATTCGTGTTTGAGTACGCAGGTGAACTCTTAACTACCAAGGAAGCACAGAGGAGACATCAATATTACGATGAACTGGCTTTGCAGGGTCGTTTCTCTTCTGCTCTTTTAGTTGTAAGGGAACATCTTCCTTCTGGAAAGGCATGCTTGAGACTGAACATCGATGCAACAAGAATAGGAAATGTTGCACGGTTTGTTAATCATTCATGTGATGGTGGTAATTTAAGCACAAAGCTAGTTAGAAGTTCAGGAGCTTTGTTTCCCCGGCTTTGCTTCTATGCTTCAAAAGATATACAGGAAGATGAAGAGCTTACTTTTAGCTATGGTGAAATCAGGAAAAGGCCTAATGGATTGCCATGCTTTTGCAATAGCCCCTCTTGCTTTGGAACATTGCCCTCTGAAGACACCTGA 1005 0.5075 MAEEEAVPLKRHNRKELLLLHEWAELVLPYLTPSELANVSMTCTTLRQLSHSITLRRSEDASRTFENFPVPFLNTVDPYPYAHFLYTPSLLLPSPLLSRQPWGASSVISPSAPIQLRAESVSLVHASGCDCESCAGSDCPCLALDEQDDVGRECGPGCRCGLKCGNRLTRNGVAVRVKIVRDKRKGWGLCADQFIRKGEFVFEYAGELLTTKEAQRRHQYYDELALQGRFSSALLVVREHLPSGKACLRLNIDATRIGNVARFVNHSCDGGNLSTKLVRSSGALFPRLCFYASKDIQEDEELTFSYGEIRKRPNGLPCFCNSPSCFGTLPSEDT* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0530 334 ProSiteProfiles Post-SET domain profile. 314 330 IPR003616 -
Apr6g0530 334 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 20 323 - -
Apr6g0530 334 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 20 323 - -
Apr6g0530 334 SUPERFAMILY SET domain 67 327 IPR046341 -
Apr6g0530 334 Gene3D SET domain 38 313 IPR046341 -
Apr6g0530 334 ProSiteProfiles SET domain profile. 175 307 IPR001214 GO:0005515
Apr6g0530 334 Pfam SET domain 186 307 IPR001214 GO:0005515
Apr6g0530 334 SMART set_7 175 313 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0530 Apr-Chr6 6870130 6873010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0530 153 329 C2H2 Transcription Factor Family AT2G23740 34.211 5.07e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr6g0530 SET 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0530 K11433 - gmx:100786871 535.413