Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0513 ATGAGTAACTCACTGCACTTCAACAGTGGTGGTTATGATTTTTGTGAGAACATGAATATTTTTCCTTCACCTCATGTTCCTTCCTCCGCTTCTTCTTCATATCTTGGAATCCAACCTCCTCTGTGTTCAAACACTTTTGGGGTTATGGTTCATGATGGGGACACCAAGTGTGAAAGGTCAAATATACCCTTTCAGATTTTGAACCCCTCTGCGTTTGATCCCCGAGAGGAAATGGTAACAAGGGAAACCAATGATGAAGGGGATGAAGGGGTTGAGAACACTGGGTTGTCTTTGAAACTTGGTGAGGGAGTTGAGTCTAAGAGTCGTTCTGGCACAGAGAAAATTGAGCCCACTAAGCTTTGTGCTAGAGGTCATTGGAGACCAGCCGAAGATGCCAAACTCAAAGAGCTTGTTGCTCAGTTTGGACCCCAAAATTGGAACTCAATTGCAGAACATCTTCAAGGAAGATCAGGCAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAGAATCAACAAAAAGGCTTTTAGTGAGGAAGAAGAGGAAAGGCTCTTGGCTGCTCACAAAATCTATGGTAACAAATGGGCCATGATTTCTAGGCTCTTTCCTGGTAGAACAGACAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAAGCAAAGGGACAAATCATATCTGTATAAAAGGAGAAAGACCACATTTACAGTTCCAAAGGACTTGAATTTGCCCTTATCAAACAATGCAGGCAGTGAATCAACCATCTCAAGCACCATTCTTGATGAATCTGCCTCAACATGCACTAACCTCTCTCTCACTCCCTCTTCAGCGAAGCCAACTCTTAGGCCTTTTCTTAACCCAAGTCCGGTTCAGAATCACCAAGCCTATGGAGCAATAATGGGTTTATCTGGTAAAAGCAGGATACCGACAAGAGAAGCTGGCTTTGACAAGTTTTTTGGTGCATGGAAAGGTTCATGTGAGGCTGAAGGACCCATAGGAAGGCTCATGGGTATGGACCAATCCCATTACACACATTCAAACTCATCAGAAGTTTCAGTATCTGAGTCAGTTGCCACCAACAGGACTACCAATCTCTCAATTTCTGGGGAAAGTGAAAACATGGGTGATAACAAGGATAACATGCCATTCATTGACTTTCTTGGAGTAGGAGCCACATAG 1188 0.4352 MSNSLHFNSGGYDFCENMNIFPSPHVPSSASSSYLGIQPPLCSNTFGVMVHDGDTKCERSNIPFQILNPSAFDPREEMVTRETNDEGDEGVENTGLSLKLGEGVESKSRSGTEKIEPTKLCARGHWRPAEDAKLKELVAQFGPQNWNSIAEHLQGRSGKSCRLRWFNQLDPRINKKAFSEEEEERLLAAHKIYGNKWAMISRLFPGRTDNAVKNHWHVIMARKQRDKSYLYKRRKTTFTVPKDLNLPLSNNAGSESTISSTILDESASTCTNLSLTPSSAKPTLRPFLNPSPVQNHQAYGAIMGLSGKSRIPTREAGFDKFFGAWKGSCEAEGPIGRLMGMDQSHYTHSNSSEVSVSESVATNRTTNLSISGESENMGDNKDNMPFIDFLGVGAT* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0513 395 PANTHER OS08G0435700 PROTEIN 75 395 - -
Apr6g0513 395 CDD SANT 186 217 IPR001005 -
Apr6g0513 395 SUPERFAMILY Homeodomain-like 123 216 IPR009057 -
Apr6g0513 395 ProSiteProfiles Myb-like domain profile. 123 169 IPR001005 -
Apr6g0513 395 Pfam Myb-like DNA-binding domain 126 186 - -
Apr6g0513 395 MobiDBLite consensus disorder prediction 79 113 - -
Apr6g0513 395 PANTHER MYB PROTEIN-RELATED 75 395 - -
Apr6g0513 395 SMART sant 122 171 IPR001005 -
Apr6g0513 395 SMART sant 174 222 IPR001005 -
Apr6g0513 395 Gene3D - 176 240 - -
Apr6g0513 395 ProSiteProfiles Myb-like domain profile. 170 220 IPR001005 -
Apr6g0513 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 224 IPR017930 -
Apr6g0513 395 Gene3D - 123 174 - -
Apr6g0513 395 CDD SANT 126 167 IPR001005 -
Apr6g0513 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 169 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0513 Apr-Chr6 6268954 6270522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0513 101 395 MYB Transcription Factor Family AT5G17800 46.844 1.22e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr6g0513 Myb_DNA-bind_6 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0513 K09422 - gmx:100791795 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0513 6 6268954 6270522 Apr6g0513 6 6268954 6270522 ECH