Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0508 ATGGGAAGCAGAAAGGAAGAAGAGAAGAACGAGAAAATCATAAGGGGTCTCATGAAGCTTCCGCCGAATCGAAGATGCATCAACTGCAATAGCTTGGGACCGCAATATGTATGTATAAATTTTTGGACTTTTATTTGCATGACATGCAGTGGAATACATCGTGAATTTACCCATCGTGTGAAGTCTGTGTCAATGGCTAAATTTACTTCACAAGAAGTTGATGCTCTTCAAAATGGAGGTAATCAGCGGGCAAGGGAAATATACCTGAAAGATTGGGACTTCCAAAGGCAACGGTTGCCAGATAACAGCAATGTTGAAAAAATAAGGGAATTTATAAGAAGTGTATATGTAGATAGAAGATATTTTGGAGTGAAGTCTTCAGAAAAGCCTCCAAGAGACTCACAGAGCCCAAGAATTCATGAAGATGAAATTAGACGTGCCAGTTCGTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAATATGAGGATCGACGGTATGGAAAACAAGCAGCTGCATTGACTAGGAAGCCTGGTTCAGATAAAGTTCGCTATGAAGGGAAGATGTCTAGTATTATCTACAGTCCTGGGCGCTTTAGTGATCATGCATATGATGACAGATTTGCAAATGAGGGATCTGGTCCAAGAATTTCTGACTTTTCTGTGTCTAGTGCTGGTGACCAATTCAAATCTGATGTTCATTCTCCCAATTATCATAAGGATAGTGGGATTAGCAGTCCTTCCAATCAGGGTTCTGGTTCCAGTTCAAGTGAAGATGTGTGGTCCCAAGCAAGAAATACATCTCTAGAAACCAATGCCAATGTCAATGCCAAGAGGGATGCAGATGGAATCCATCCTCTGCAGAGAACTGCATCAACACAATCAACAGACAGAAAATTTTCATCCTTGAGATCTTATCATTCTGGCAGTTTAGTTGATTTTTTATCAGAACCAGTCCAAGCTTCAGAATCCCTTCAGAATAAAGCATTTGGAATTCCAAGACCATCTGGTCCTACAAGATCTACTAGCATGGACCTCTCCAAGGCACCACTGGAATCAACTTCATCTGTTGATCTTTTTCAGTTACCAGAAGCACCCTCACAAGCTCCATTAGTGGATCTGTTTCAATCATCTGTTTTGTCTGAAACTCCGTCTTTCAATGTGAATCAACTTACTCAAACATCCCAACCTGTATCTGTTGACCTTTTTGCAGATCTTTCTCTGCAGTCTTCTACAGTATCCTCAAATAAGAGCTCCCTAGAGTTATCTGTTTCTAAAAATGAAGGATGGGCAACTTTTGATATGCCTCAGGGTACATCATCTACTGCACAAGTGGAAAATCCAGCCACTGTAACCTCAAGTGCTGAACCTTCGCAGGAAAGATTTGATCCATTTTCAACCTCAAATCCAAACATGCAATGGCCATCTTTTGAATTTTCTAGTGTCAGTGTACCTTCTTCAGTAACGTCTAATTTATGGCATGATGGCTTGGGGAATAGGAAAGAACAAGGTTCTGTTTCAGCAACAAACTCTCAACCATGGAATGCATTTGAAGATTCTGGTGGCGATCTTCCTGTGGATGCCCATAGTCAAGAATTACAAATGCACAATTTTCCATCAGCTGATAATCGATTTTGGGGTTTAAGAGAGGCTGAGGATCAGGGATTCAATAAAGATGTAGTTCAAGGTACTGCCCCTATTGGTGGATTTGATAATCATGACATACCATCACATGTCAGTGGCTCACCATATCCCCTGCCACCACTTCCTCCAATGGGAGATATTCAACAAAATGTAGTCAATTTTAAATCAACTAATCCATTTGATTATCCCTATGAATCTGATGTAGATCACAACAATATGTTTGTTGATATGAGCTCTTTGCAAGCTGCCCTGCCAGATGCCCTGTTGCCAGCCACCTTACGTGGTGGTATAGCTGAACCTTGGCTTCCTCAAAATACAGTGACCCCATATATTTCCTCTGCTGGAGAAGGTGGTTTGTCATTCATGGCTATGCAGTCTCCAAGTTCTCAAATACAGAATATCCAAACACCCGAACCAGTTGCTTCGTTTGGGGGAAATCCATTTGCATAA 2097 0.4101 MGSRKEEEKNEKIIRGLMKLPPNRRCINCNSLGPQYVCINFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREIYLKDWDFQRQRLPDNSNVEKIREFIRSVYVDRRYFGVKSSEKPPRDSQSPRIHEDEIRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKVRYEGKMSSIIYSPGRFSDHAYDDRFANEGSGPRISDFSVSSAGDQFKSDVHSPNYHKDSGISSPSNQGSGSSSSEDVWSQARNTSLETNANVNAKRDADGIHPLQRTASTQSTDRKFSSLRSYHSGSLVDFLSEPVQASESLQNKAFGIPRPSGPTRSTSMDLSKAPLESTSSVDLFQLPEAPSQAPLVDLFQSSVLSETPSFNVNQLTQTSQPVSVDLFADLSLQSSTVSSNKSSLELSVSKNEGWATFDMPQGTSSTAQVENPATVTSSAEPSQERFDPFSTSNPNMQWPSFEFSSVSVPSSVTSNLWHDGLGNRKEQGSVSATNSQPWNAFEDSGGDLPVDAHSQELQMHNFPSADNRFWGLREAEDQGFNKDVVQGTAPIGGFDNHDIPSHVSGSPYPLPPLPPMGDIQQNVVNFKSTNPFDYPYESDVDHNNMFVDMSSLQAALPDALLPATLRGGIAEPWLPQNTVTPYISSAGEGGLSFMAMQSPSSQIQNIQTPEPVASFGGNPFA* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0508 698 MobiDBLite consensus disorder prediction 239 276 - -
Apr6g0508 698 Pfam Putative GTPase activating protein for Arf 12 121 IPR001164 GO:0005096
Apr6g0508 698 MobiDBLite consensus disorder prediction 125 161 - -
Apr6g0508 698 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Apr6g0508 698 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Apr6g0508 698 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Apr6g0508 698 MobiDBLite consensus disorder prediction 206 301 - -
Apr6g0508 698 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Apr6g0508 698 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 698 - -
Apr6g0508 698 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Apr6g0508 698 CDD ArfGap_AGFG 11 122 - -
Apr6g0508 698 MobiDBLite consensus disorder prediction 326 351 - -
Apr6g0508 698 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Apr6g0508 698 MobiDBLite consensus disorder prediction 217 232 - -
Apr6g0508 698 MobiDBLite consensus disorder prediction 125 148 - -
Apr6g0508 698 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Apr6g0508 698 MobiDBLite consensus disorder prediction 437 469 - -
Apr6g0508 698 PANTHER ARFGAP/RECO-RELATED 1 698 IPR044820 GO:0005096
Apr6g0508 698 MobiDBLite consensus disorder prediction 337 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0508 Apr-Chr6 6134863 6146458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0508 14 137 C2H2 Transcription Factor Family AT3G07940 30.597 5.39e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0508 K15044 - gmx:100788316 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0508 6 6134863 6146458 Apr6g0508 6 6134863 6146458 ECH