Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0500 ATGGATCATTACAAGGTTCTTGGATTGCACAGAACCGCTACCAAGGAAGAAATCAAAGCAGCGTTTAAGAAACTAGCGTTTCAATTCCACCCAGACAAACATTCCCAATCGCCAAAGGCCATGAGGGACAACGCCACCCTCCGATTCAAGCAAGTCTCTGAGGCCTACGAGGTCCTCATGGACGATGGCAAGCGCGCCGACTACAATTTCCGGTGCCGTTCCGGCGCCGGCCCCGGCACCGGCGGTGGAAACAACTATTATTCGCAGTATAGCTACGGATATGGTAGGAGTGAAAGCAGCTACCAATATAAACCTAGGTCTGGGGTCAAGGCTGGTGGCTTCGCGTCCAAGTTTGAACTCGCTATTCGGATTTTGACGGCGCGATCTTCTCTTCTCAATCTCAGCTTCGCAGCAGCTATATTAGGTGGAATTGTTGTCATCAATGCAAGCGGAGAATCCTTATGGAACATGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAAGTCCATTGAGAAGGCTAAAGCTTATAAAGAAGATAACATGCAGGAACGCCCTTGA 561 0.4866 MDHYKVLGLHRTATKEEIKAAFKKLAFQFHPDKHSQSPKAMRDNATLRFKQVSEAYEVLMDDGKRADYNFRCRSGAGPGTGGGNNYYSQYSYGYGRSESSYQYKPRSGVKAGGFASKFELAIRILTARSSLLNLSFAAAILGGIVVINASGESLWNMQNSGKSFEEAMKSIEKAKAYKEDNMQERP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0500 186 SUPERFAMILY Chaperone J-domain 1 94 IPR036869 -
Apr6g0500 186 CDD DnaJ 2 61 IPR001623 -
Apr6g0500 186 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
Apr6g0500 186 PRINTS DnaJ domain signature 4 22 IPR001623 -
Apr6g0500 186 PRINTS DnaJ domain signature 22 37 IPR001623 -
Apr6g0500 186 PRINTS DnaJ domain signature 44 64 IPR001623 -
Apr6g0500 186 PRINTS DnaJ domain signature 64 83 IPR001623 -
Apr6g0500 186 PANTHER CO-CHAPERONE PROTEIN DJLA 1 169 - -
Apr6g0500 186 PANTHER CHAPERONE PROTEIN DNAJ 72 1 169 - -
Apr6g0500 186 Pfam DnaJ domain 2 69 IPR001623 -
Apr6g0500 186 SMART dnaj_3 1 64 IPR001623 -
Apr6g0500 186 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Apr6g0500 186 Gene3D DnaJ domain 1 119 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0500 Apr-Chr6 5972280 5975646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0500 3 69 C2H2 Transcription Factor Family AT1G74250 38.806 2.57e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0500 - - gmx:100782769 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0500 6 5972280 5975646 Apr6g0500 6 5972280 5975646 ECH