Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0473 ATGGAGGAAGTGAAGGAAAATGGTTGGAGAATAGAGGTAGAGGAGAAGCTCAAGAGACTGCAATCTCTTCTATTCGGCGTTGAACGGGCTCTCCAAAACAACGATTTCTCTTCTGCATACGTTCTTGCGCTTCGTCTCCTTGGATTCCTCGACGCACATTCTCACTCCGACGTCGACGAAGCCTTCCTTCAACCGATTCGCCGCGATGCACTCGCCAAACTCAACTCCGCTCGCCGTTCCCTAAACCCTCAATCAAATCGCCAAGCTTTTGACCATGCAAAGAAGTCTCCAGGATCTGTTTTTGGCACAACAGGAGATATTGACTTGGAGAAGATTCAGAATTCAAAGTACTTTCGAGCTCTGGTCAAGCAATCTAAGGAAAAAGTTGAGAATCAATTGGTTGATCAACGGGGAAAGCAGGGGAAAGCAGGAAGCAAAGCCTCAAAGGAAATGGTGCAAGCGAAGTTAACATCCATGTATGGGAAAGGCAGTTTGAGGACTGGTAATGGTTCCAGGAATTTTTTGAACATGAAAAATAATAGCTCTGAGGACTGCATGATTGTTGATAGGCCTCAATCTCATGCCAACCATACAATGGATCCTGGTGGTGTCTCTTCTGTCTTGCTAGTTGGAGGAGAAGAAAGAGCTTTCCGAAACACTTTTTTGACAAAACGTGTACACATGGAAAATAATAGCCCCCGAGTTGGTTGTGTAAAGTCGCCTTCAAGCAAGGAGGAAGCTAATCCTGATGCTTGTGGTAACGGGTTTGTTACTGCCAGAGCAAAATTGGAAATGGAAACAAAGCAAAGGCGAGGAGTAGGTGGTTCACCCAGTGCATCTGTCTCACCACAATGCGATAACAATCCTGCCAACAGGTTATACGGTGGGAGATCATATGGTGTTTCACGACGTGGCTTCCGTGGTAATTTTGTTCCTCCCATTAAATCCAATGGGAACGGTTCTGGAAATATGAGTTCACGCGTTGCTGGGAAGTGTGATGATTCTTTAGATGATTCTACAAAAAGATGTTTGGAAATCCTGTGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTGGAACCTCGCCTCATTGAACATGTTAGTAATGAGATTATGGATAAAGATCCCAATGTCCGGTGGGATGATATTGCTGGATTGGAGCATGCCAAGAAATGTGTCACTGAGATGGTCATATGGCCTCTGCTACGTCCTGACATATTCAAGGGATGTCGATCCCCTGGGAGGGGTCTGCTTCTGTTTGGCCCACCTGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCAAAGGCAACCTTCTTTTACATATCTGCAAGTTCGTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCCCTTTTTGGTGTTGCCAGTTGTCGTCAACCAGCAGTAATTTTTGTTGATGAAATAGATTCGCTCCTATCTCAGCGTAAGTCAGATGGTGAGCACGAATCAAGTAGACGGCTAAAGACACAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGTAGTGAGCAAATTCTGCTTATTGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCCGCACGAAGGAGACTTACTAAAAGACTTTACATTCCCCTACCATCCTCAGAGGCAAGAGTTTGGATTGTACGTAACCTTTTAGAAAAAGATGGATTATTCAAGCTGTCAAATGAGGAAATGGATACTATATGCAACCTAACGGAAGGTTATTCAGGATCAGACATGAAAAATTTAGTGAAGGATGCTTCTATGGGACCCCTAAGAGAGGCTTTAAGGCAAGGCATTGAAATTACAAAGTTGAAAAAAGAGGATATGCGGCCAGTAACTCTTCAGGACTTTGAGAATGCCCTGCAAGAAGTGCGGCCTTCTGTTTCCCCAAATGAACTTGGCACTTACGATCAATGGAACAAGCAATTTGGAAGCCTATCACTGTAG 1983 0.4458 MEEVKENGWRIEVEEKLKRLQSLLFGVERALQNNDFSSAYVLALRLLGFLDAHSHSDVDEAFLQPIRRDALAKLNSARRSLNPQSNRQAFDHAKKSPGSVFGTTGDIDLEKIQNSKYFRALVKQSKEKVENQLVDQRGKQGKAGSKASKEMVQAKLTSMYGKGSLRTGNGSRNFLNMKNNSSEDCMIVDRPQSHANHTMDPGGVSSVLLVGGEERAFRNTFLTKRVHMENNSPRVGCVKSPSSKEEANPDACGNGFVTARAKLEMETKQRRGVGGSPSASVSPQCDNNPANRLYGGRSYGVSRRGFRGNFVPPIKSNGNGSGNMSSRVAGKCDDSLDDSTKRCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARVWIVRNLLEKDGLFKLSNEEMDTICNLTEGYSGSDMKNLVKDASMGPLREALRQGIEITKLKKEDMRPVTLQDFENALQEVRPSVSPNELGTYDQWNKQFGSLSL* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0473 660 MobiDBLite consensus disorder prediction 268 293 - -
Apr6g0473 660 CDD AAA 412 549 - -
Apr6g0473 660 Gene3D - 550 636 - -
Apr6g0473 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 655 IPR027417 -
Apr6g0473 660 MobiDBLite consensus disorder prediction 273 291 - -
Apr6g0473 660 ProSitePatterns AAA-protein family signature. 521 540 IPR003960 GO:0005524|GO:0016887
Apr6g0473 660 SMART AAA_5 415 551 IPR003593 -
Apr6g0473 660 PANTHER FIDGETIN-LIKE PROTEIN 1 65 657 - -
Apr6g0473 660 PANTHER AAA DOMAIN-CONTAINING 65 657 - -
Apr6g0473 660 Pfam Vps4 C terminal oligomerisation domain 622 656 IPR015415 -
Apr6g0473 660 Pfam ATPase family associated with various cellular activities (AAA) 419 549 IPR003959 GO:0005524|GO:0016887
Apr6g0473 660 Gene3D - 378 652 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0473 Apr-Chr6 5597945 5605618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0473 356 658 Calmodulin-binding Proteins AT3G56690 32.143 6.66e-42 161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0473 6 5597945 5605618 Apr6g0473 6 5597945 5605618 ECH