Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0468 ATGGGAGAGGAATATGGTCAGCACAAAGAAAGCACATCAATCAATGATAACATGGAGGAAGAGGCTGTGGAAAGAGATCCAGAAAGCAATCAACTACATGACCCACTCCTCAAGAGGAGTAGAACCCTCTCTTCCAATCCCCTTGCTCTTGTTGGAGCAAAAGTTTCCTACATAGAAAGCTTGGATTATGAGATCAATGAGAATGATTTATTCAAGCAAGATTGGAGGAGCAGATCAAGAGCTCAAGTGTTTCAATACATATTCTTGAAATGGTCTCTTGCTTTCCTTGTTGGACTTCTCACTGGTGTCATAGCCACCCTCATCAATCTTGCTGTTGAGAACATTGCAGGCTACAAGCTTCTTGCTGTTGTTAGTCTTATCCAAAAAGAAAGGTACTTGACGGGTTTCCTATATTTCACGGTCTCCAATTTCCTTTTGACATTTGTTGCTGCTCTTCTCTGTGTGTGTTTTGCACCCACAGCTGCTGGACCTGGTATCCCTGAAATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTACGGTGCTACAACATTGTTTGTTAAGATAATTGGAAGCATTGGAGCTGTAGCTGCAGGGCTAGATTTAGGAAAAGAAGGGCCTTTGGTACATATTGGAAGCTGCATTGCTTCCCTACTAGGCCAAGGAGGCCCTGACAATCACAGGATCAAGTGGATGTGGCTGCGGTATTTCAACAATGATCGCGATCGTCGTGATCTTATCACCTGTGGTGCTTCTTCAGGGGTTTGTGCAGCTTTCAGGGCCCCTGTGGGTGGAGTACTCTTTGCTCTTGAAGAGGTGGCAACATGGTGGAGAAGTGCTCTCCTTTGGAGAACTTTCTTCAGCACAGCTGTGGTTGTGGTAGTGCTAAGGGCCAGTATTGAACTTTGCCACCTAGGAAAATGTGGTCTTTTTGGAGAAGGGGGGTTGATCATGTTTGATGTGAGCAATGTCATTGTGAGGTACCATGTGATGGATATCATCCCTGTTGTTACCATTGGAGTTCTTGGTGGGTTATTGGGAAGCCTTTACAATTACCTTCTCCATAAGGTCCTACGCGTCTACAATCTCATCAATCAGAAAGGGAAAATATATAAGCTCCTCCTTGCTCTTTCAGTTTCACTCTTCACATCAGTGTGCCAATATGGTCTCCCATTCCTAGCAAAATGCACCCCTTGTGATCCATCATTTCCAGAGTCTGTTTGCCCCACCAATGGGAGATCTGGAAATTTCAAACAATTCAACTGCCCAAATGGCCACTACAATGATCTTGCCACTCTTCTTCTTACCACCAATGATGATGCTGTTAGAAACATATTCTCAACCAACACTCTTCATGAATACCAACCCTCCTCCATCATAATTTTCTTTGCACTCTATTGCATATTAGGACTAATAACCTTTGGAATTGCTGTGCCATCAGGCCTATTCCTCCCAATCATTCTCATGGGTTCAGGTTATGGCCGGCTTCTAGGCATTATCATGGGACCTAACACAAACATTGACCAAGGATTGTTTGCAGTTCTTGGTGCAGCCTCACTCATGGCTGGATCTATGAGAATGACTGTGTCCCTTTGTGTGATCTTCCTTGAACTAACCAACAACCTTCTACTACTACCAATAACCATGATTGTTCTCCTCATAGCTAAAACTGTTGGAGACAGTTTCAACAAAAGCATCTATGAGATCATACTTCACCTAAAAGGCCTTCCTTTCATGGATGCAAACCCTGAGCCATGGATGAGAAACCTCACTGTTGGAGAGCTTGTTGATGTGAAGCCAGCAGTGGTTAGCTTCAGAGGAGTAGAAAAGGTGGCTAACATAGTCAATGCCTTGAGAAACACTACACATAATGGTTTTCCTGTGTTGGATTGTGGTGTAGTGCCACCAACAGGACGAGCCACTGAGGTGACAGAATTGCATGGAATCATTCTAAGAGCACACCTCATTAAAGTGCTAAAGAAGAAGTGGTTCTTGAAAGAGAGAAGGAGAACTGAGGAGTGGGAAGTGAGAGAGAAATTTACTTGGGTGGAGCTGGCTGAGAGAGAAGGGAACATTGAAGATGTGGCTGTGACAAAAGAAGAAATGGAGATGTTTATTGATCTCCACCCTCTCACCAATACAACTCCTTTTACAGTGCTAGAGAGTATGTCAGTTGCAAAAGCATTGGTTCTCTTCAGACAAGTAGGACTTCGCCATATGCTTGTTGTACCCAAGTATCAAGCATCTGGGGTATCTCCTGTGATCGGGATTTTGACAAGGCAGGATCTACTATCCCACAACATTCTGACAGTGTTTCCTCACCTGGCAAAATCAAAGAGGAAGTGA 2352 0.4388 MGEEYGQHKESTSINDNMEEEAVERDPESNQLHDPLLKRSRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRAQVFQYIFLKWSLAFLVGLLTGVIATLINLAVENIAGYKLLAVVSLIQKERYLTGFLYFTVSNFLLTFVAALLCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWMWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRASIELCHLGKCGLFGEGGLIMFDVSNVIVRYHVMDIIPVVTIGVLGGLLGSLYNYLLHKVLRVYNLINQKGKIYKLLLALSVSLFTSVCQYGLPFLAKCTPCDPSFPESVCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSTNTLHEYQPSSIIIFFALYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIIMGPNTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNKSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVVSFRGVEKVANIVNALRNTTHNGFPVLDCGVVPPTGRATEVTELHGIILRAHLIKVLKKKWFLKERRRTEEWEVREKFTWVELAEREGNIEDVAVTKEEMEMFIDLHPLTNTTPFTVLESMSVAKALVLFRQVGLRHMLVVPKYQASGVSPVIGILTRQDLLSHNILTVFPHLAKSKRK* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0468 783 CDD CBS_pair_voltage-gated_CLC_euk_bac 601 768 - -
Apr6g0468 783 SMART cbs_1 603 662 IPR000644 -
Apr6g0468 783 SMART cbs_1 717 770 IPR000644 -
Apr6g0468 783 Gene3D Clc chloride channel 82 583 - -
Apr6g0468 783 ProSiteProfiles CBS domain profile. 714 780 IPR000644 -
Apr6g0468 783 SUPERFAMILY Clc chloride channel 68 583 IPR014743 -
Apr6g0468 783 Pfam CBS domain 716 767 IPR000644 -
Apr6g0468 783 Gene3D - 586 769 IPR046342 -
Apr6g0468 783 PANTHER CHLORIDE CHANNEL PROTEIN 8 782 - -
Apr6g0468 783 PRINTS Chloride channel signature 159 176 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0468 783 PRINTS Chloride channel signature 190 209 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0468 783 PRINTS Chloride channel signature 254 273 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0468 783 PRINTS Chloride channel signature 480 500 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0468 783 PRINTS Chloride channel signature 512 528 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0468 783 PRINTS Chloride channel signature 530 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0468 783 PRINTS Chloride channel signature 568 582 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0468 783 SUPERFAMILY CBS-domain pair 585 767 IPR046342 -
Apr6g0468 783 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 8 782 - -
Apr6g0468 783 CDD ClC_6_like 59 581 - -
Apr6g0468 783 MobiDBLite consensus disorder prediction 1 32 - -
Apr6g0468 783 PRINTS Plant CLC chloride channel signature 64 72 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr6g0468 783 PRINTS Plant CLC chloride channel signature 275 283 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr6g0468 783 PRINTS Plant CLC chloride channel signature 289 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr6g0468 783 PRINTS Plant CLC chloride channel signature 307 314 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr6g0468 783 PRINTS Plant CLC chloride channel signature 432 448 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr6g0468 783 Pfam Voltage gated chloride channel 147 561 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0468 Apr-Chr6 5525146 5530286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0468 8 781 Ion Channels AT3G27170 78.036 0.0 1229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0468 K05016 - gmx:778094 1380.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0468 6 5525146 5530286 Apr6g0468 6 5525146 5530286 ECH
Apr4g1637 4 19032053 19036787 Apr6g0468 6 5525146 5530286 PCT