Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0460 ATGAAAACTTTCTCTTCAATTCTACCACCCCACCATTTTCCTTGCACAAAATTTAACTCTTTCACTGCCCCAAGGACTCAAGTATCTTTTCCTGCAAAGGTCTTCTTGTGCCAGGCAAAATCTGGCATAGATGAATCTTTGAGCTTAAAAGTAATGTCCCCAACTCTGTTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTATTGATGTTGTTTTTGAAGAAACAAGGTTTAAGCAATGCGGTTGCAGCTAGAACCGCCAACAAGTCAGATCTTTTCATTGATCACCTTGTCTCAAAGCTTCACTCTAAACACAAATCTCGGTACCTTTCAGGGAGAGAGCTTACAACTATGGAGATTAGGGATGCCCTTATCCCTTATCTTGAATCCCTTTTTGAAGAGCATGGAAATATTCTAGCGAATGTAGTGGAAAATTATCCAAATCCACCCGTGAAGGATAAATCAGCTGTGTCAGTTCCTCGCTCTAGTCCAGTGGTAGACTCTAAGAAGCTTAAAGTAGTGTCTCGAGGGAGTGAGATAGACCCGAATGCCGGCAATCTACGCCCTCATATTGTCTATCTCATGGAATTTGGTATGAATATTGAGCAGATTAGGAGTATCACACGACGATTCCCATCTTTTGCCTACTATAGCTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCAAAAGAGAACATTCCCAATATCCTCGCTAAAAGGCCTCAATTATGTGGAATCAGTCTGTCTGAAAATCTTAAACCCACCATGAAGTTCTTAGAATCTTTGGGTGTTGACAAGAAACAATGGCCAAAGGTGATCTATCGCTTCCCGGCGCTGTTGACTTATAGCAGGCAGAAGGTGAGGGAAAGTGTAGATTTTCTTCATGAATTGGGCCTCTCAGAAGAGAGCATAGGTAAGATTTTAACTCGCTGCCCCAATATTGTTAGTTACAGTGTAGAAGACAATCTCCGACCAACGGCTAAGTACTTTCGTTCTTTGGGAGTTGATGTTGGCATTCTTCTATTTAGGTGCCCACAGAATTTTGGTCTTAGCATTGAGGCTAATCTAAAGCCTGTAACAGAATTTTTCTTGGAGAGAGGATACACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTTTCAGCTTGACTGAAAATTTGACTCCAAAATGGTATTTCTTTTTGACCACAGGTTACCCAACTTCTGAGCTAGTTAAATTCCCTCAATATTTTGGATACAGTTTAGAGGAAAGAATTAAACCAAGATTTGCACATATGAAAACATCTGGAGTGAAGTTACTGCTGAACCAGGTTCTCTCACTGTCAAGCAGCAACTTTGAAGAGGCCTTGAAAAAGAAAATGAAGAAAATGCAAGTTGATTAG 1416 0.4068 MKTFSSILPPHHFPCTKFNSFTAPRTQVSFPAKVFLCQAKSGIDESLSLKVMSPTLLAAEKEEAKAVLMLFLKKQGLSNAVAARTANKSDLFIDHLVSKLHSKHKSRYLSGRELTTMEIRDALIPYLESLFEEHGNILANVVENYPNPPVKDKSAVSVPRSSPVVDSKKLKVVSRGSEIDPNAGNLRPHIVYLMEFGMNIEQIRSITRRFPSFAYYSLEGKIKPVVEFFLELGVPKENIPNILAKRPQLCGISLSENLKPTMKFLESLGVDKKQWPKVIYRFPALLTYSRQKVRESVDFLHELGLSEESIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIEANLKPVTEFFLERGYTLEEIGTMISRYGALYTFSLTENLTPKWYFFLTTGYPTSELVKFPQYFGYSLEERIKPRFAHMKTSGVKLLLNQVLSLSSSNFEEALKKKMKKMQVD* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0460 471 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Apr6g0460 471 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Apr6g0460 471 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Apr6g0460 471 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Apr6g0460 471 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Apr6g0460 471 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Apr6g0460 471 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Apr6g0460 471 Pfam mTERF 291 458 IPR003690 GO:0003690|GO:0006355
Apr6g0460 471 Pfam mTERF 52 301 IPR003690 GO:0003690|GO:0006355
Apr6g0460 471 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 23 470 - -
Apr6g0460 471 PANTHER CGI-12 PROTEIN-RELATED 23 470 IPR003690 GO:0003690|GO:0006355
Apr6g0460 471 Gene3D Transcription termination factor 3, mitochondrial 248 467 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0460 Apr-Chr6 5385518 5388129 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Apr6g0460 mTERF 2.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0460 K15032 K12177 gmx:100781900 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0460 6 5385518 5388129 Apr6g0460 6 5385518 5388129 ECH