Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0449 ATGGCTGGAGGTGTTATTCAGCAATTGTTGAGGAGGAAACTCCATAATGATTCTGTTATTAGTCAGTTAATTTATTGGTTAAGTAGTTTCAGTTTGAAAGATGGTGCTGGCTCTACTGGCAGCAGCTCCTTTAGAGCGATAGCATTAATTGGAGCTGGTGTGTCAGGGTTTTTGAGCTTTGCTACAACAGCATCAGCTGATGAAGCTGAGCATGGCCTAGCATGTCCAAACTATCCATGGCCTCACAAGGGCATCCTCAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCCTGTCATTCTATGTCTTTAATATCATACCGTGATTTGGTTGGTGTTGCTTACACTGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCTGATGGCCCTAACGATGAGGGTGAGATGTTCGCACGCCCTGGTAAACTCAGTGACCGTTTTCCTCAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCCTATCCTCCCGATTTAAGTCTTATTACCAAAGCCCGTCACAATGGTCAGAACTATGTTTTTGCACTTCTAACTGGTTATCGTGATCCTCCTGCTGGCGTATCGATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGCGGGGCCATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTTGAATATGAAGATGGTACCCCTGCTACAGAAGCTCAGATGGGTAAAGATGTTGTGTCTTTCTTGTCTTGGGCTGCTGAACCTGAGATGGAAGAGAGAAAATTGATGGGATTTAAATGGATATTTGTTTTATCACTGGCATTACTTCAAGCTGCCTATTACCGTCGCCTTCGGTGGTCTGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG 930 0.443 MAGGVIQQLLRRKLHNDSVISQLIYWLSSFSLKDGAGSTGSSSFRAIALIGAGVSGFLSFATTASADEAEHGLACPNYPWPHKGILSSYDHASIRRGHQVYQEVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVADGPNDEGEMFARPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0449 309 Pfam Cytochrome C1 family 80 296 IPR002326 GO:0009055|GO:0020037
Apr6g0449 309 PANTHER CYTOCHROME C1 33 309 IPR002326 GO:0009055|GO:0020037
Apr6g0449 309 Gene3D - 265 308 - -
Apr6g0449 309 PRINTS Cytochrome C1 signature 78 97 IPR002326 GO:0009055|GO:0020037
Apr6g0449 309 PRINTS Cytochrome C1 signature 98 117 IPR002326 GO:0009055|GO:0020037
Apr6g0449 309 PRINTS Cytochrome C1 signature 143 163 IPR002326 GO:0009055|GO:0020037
Apr6g0449 309 PRINTS Cytochrome C1 signature 176 200 IPR002326 GO:0009055|GO:0020037
Apr6g0449 309 PRINTS Cytochrome C1 signature 214 225 IPR002326 GO:0009055|GO:0020037
Apr6g0449 309 PRINTS Cytochrome C1 signature 225 244 IPR002326 GO:0009055|GO:0020037
Apr6g0449 309 PRINTS Cytochrome C1 signature 245 264 IPR002326 GO:0009055|GO:0020037
Apr6g0449 309 PRINTS Cytochrome C1 signature 264 279 IPR002326 GO:0009055|GO:0020037
Apr6g0449 309 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 33 309 - -
Apr6g0449 309 ProSiteProfiles Cytochrome c family profile. 92 199 IPR009056 GO:0009055|GO:0020037
Apr6g0449 309 Gene3D - 69 264 IPR036909 GO:0009055|GO:0020037
Apr6g0449 309 SUPERFAMILY Cytochrome c 73 263 IPR036909 GO:0009055|GO:0020037
Apr6g0449 309 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 264 308 IPR021157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0449 Apr-Chr6 5233493 5244148 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0449 1 309 Chloroplast and Mitochondria Gene Families AT3G27240 84.790 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0449 K00413 - gmx:100789781 550.436