Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0433 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTTATGAATTTCATTCTCAACAATGGTATCCATTGTTGGAGAACAGTTCCCAAGCTAGCAGGCCTATTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTTAGGCCAGACCTCAAGAGAGGTGGCTTTACTGAAATGGAAGAGGATCAAATTATACAGCTACATTCATGTCTTGGTAACAGGTGGTCTAAGATAGCTGCACATTTTCCAGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATCAAGAAGAGGTTGAAGCTCCTTGGTTTGGACCCTGTGACCCTGAAGCCAATTGAGCATAAGGAACTGTTTGTTGATGACAAAAATAAGACAAGCCTTCAGCCAAACACATCAAAAGGTTCTGAACAAGGTGTGGAGAATAAGTCGTTGGACATGCATGACACAATAAAAATGCCAAAAACAGAAGGAAAAATGGAAGAAAACAAGGTGAATTGGGATGATGATACCATTGGAATTTTTAACAATTATGAAATGCTGTGCTCACAATTGGACTTGGGATTATGGATGAGTCAAGAAACCAAAACCAGTACTAGTTCTTATAGTAGTTCTTCTTTCTCACTTGATGATTCTAGCAACATTTTGGTGGGTGAATCTCCTTGCCTTCAGGAAAATTCTTTACAACAATGGGTTGGTGGTTTTGATTCTCTCTCATGGGATAGCTTCAGTCCTCTTGAGAAAGATATTCTCTTCTTGGAAAATAGGCATTAA 822 0.3929 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSCLGNRWSKIAAHFPGRTDNEIKNHWNTKIKKRLKLLGLDPVTLKPIEHKELFVDDKNKTSLQPNTSKGSEQGVENKSLDMHDTIKMPKTEGKMEENKVNWDDDTIGIFNNYEMLCSQLDLGLWMSQETKTSTSSYSSSSFSLDDSSNILVGESPCLQENSLQQWVGGFDSLSWDSFSPLEKDILFLENRH* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0433 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr6g0433 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr6g0433 273 Gene3D - 69 160 - -
Apr6g0433 273 Gene3D - 11 67 - -
Apr6g0433 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr6g0433 273 MobiDBLite consensus disorder prediction 140 156 - -
Apr6g0433 273 CDD SANT 16 61 IPR001005 -
Apr6g0433 273 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Apr6g0433 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr6g0433 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr6g0433 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 250 - -
Apr6g0433 273 SMART sant 13 63 IPR001005 -
Apr6g0433 273 SMART sant 66 114 IPR001005 -
Apr6g0433 273 CDD SANT 70 110 IPR001005 -
Apr6g0433 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr6g0433 273 PANTHER MYB DOMAIN PROTEIN 40 2 250 - -
Apr6g0433 273 MobiDBLite consensus disorder prediction 137 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0433 Apr-Chr6 4986665 4987729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0433 1 197 MYB Transcription Factor Family AT5G16600 56.650 9.33e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr6g0433 Myb_DNA-binding 8.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0433 K09422 - gmx:100819471 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0433 6 4986665 4987729 Apr6g0433 6 4986665 4987729 ECH