Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0430 ATGCTTCACGTATCCGTAACCGAACGAACAGCTCCGAATGATTCAAAACCGTATAGAAAATTTCCTACGGTTCTTCCGATACGTATCAGCTCCCAGATTGTCTTCTGTTGCTACTATATTTTGCCCCCTTGTTTGCCTTTTGTACATTTAGGACACAGGTCCATGGAGGGTACGGAACCTGATATAAAAACGCACCCCCTGAAAGATGCAGAAAATGAATGTTCAATATCACCTAGGGTAGAGATTAATATGGGGCAGGAGGGTCAGATTCAGAATCCCAATGATTCCTCTATTGCAGTCAGTAACAAGGTCATTGACACTGAGAATGAGTGCACAAGTTCAAATGATTGTCCTGTTGACCATTGTCAGATGGAAATTAATGATGAATGCCATACATCTAAATCCAATAATTGCCATGAAGACAAATTTCATATTAATGTTGGTAGTAGACAGCTGTGTCAGAATCCCTGCACTTGCTCTGTTGATATATCAAGGACCAGTACTGATATAAAGAGTGAGGAGGAAATATATGTAGCACCAAAGATTGGCATGGAGTTTGAATCAGAAGACCATGCTTACAATTGTTATGGCAAGTATGCTGTTCTGAAAGGTTTCAGCATAAGAAAGGATTTTGTCAACAAAAGTAGGATAAATGGTGCAGTCGTGTCCAGAAGATACACCTGCTATAGACAGGGTTATCGTCTTAACAAAAATAGTACAAACCTGAGGAGATTCCAGCAGGAAACAAGGACAGGTTGCTTGGCACATATGACTATTGCACGTCAACTGAATGGCAAGTTTCGTGTCACACATTTTGAAACTGAGCACAATCATGAGTTTGTAACACCATGCACTGCTCATATGTTACCCTCACAGAAAAGATTGAGTTTTGCTCAAGCTGTTGAAGCAAACTTAATTGAGTCTAGGTTGGATGGGGTACCAAAACTGGGAATGGGATTTGACTCAGAGGAGCATGCATATGATTTTTATAATGCATATGCTGGACACGTAGGTTTCAGTGTAAGAAAAGATTATGTAAATAGGAGTAAAGTTGATGGTGCTGTGGCGTCTAGACGGTTTACTTGCTTCAGAGAAGGTTTTCGGCGGAAAGACAAACGGGATACGAATGTAAAGAGACCTCGGAAGGAAACTAGAATTGGATGTTTAGCGCAACTAGTGATTTCTCGTCAACCTGATGGTAGGTATCATGTAACTCACTTTGAAGAAAAGCATAATCATGAGCTTGTTGCTGCTGGTAGAGTGCATATGTTAAGATCGCAAAAGAGATTAGCAGCAACTCAAGTTGAATACAACATTGTTGATGGTTCCACTGTGCTACCTAAGTCAGTATCTGAATCCAATTGCAAGACTGTGGAACACTTAGACGATCTGGATTATGGTTCTGCAGGTTATGAATATAAACTACCATTCAAATGTACAAGAGAAATGAAAGAGGGAGAAATTGAGAAGATTAAGCATCATTTCCAAATCAAGCAATCAAAGAATCCTTCTTTCTTTTATGCATTCCAGCTTGATGCTGATGATCAAATAACTAACATTTTTTGGGCTGATACAAAGATGATAGTAGACTACAGTGATTTTGGTGATGTTGTTTGTTTCGATAGTAGTTATAAATATCACAGGGATTTCCGCCCATTTGCTCCGTTCCTTGGTATAAATAATCACCAGCAAATGACAATTTTTGGGGCTGCACTTCTGTATAATAAATCTGTGGAATCTTTAAAGTGGCTGTTTCGAGTATTCATCGAGGCAATGTCTGGAAGCAAGCCAAAGACATTCTTTACAGATCAAGATGCAATAACAGCTGAAGCAATTAAAGACGTATTACCTCAAACAAATCACCGAGTTTGTGTATGGCATGTCTATCAAGATGCCCTGAAGCAGCTAAATCACATTTCTGTTGGATCTGGTTCTTTTATAAATGATTTGAGAAGCTTCTTTTTTTATCATGATGAAGAGGAGGATTTTGCTAATGCATGGAATGCTCTCATGGACAAGTATGAACTGTGGGGAAACGAATGGTTGCATCAAATATATGAAAGCAGAGATCAATGGGCCATAGCTTATGGAAGACAATTTTTTTGTGCTGACATAGTAAGCATGCTACTGAGAGAAAACCTTACTGACAACCTTAAAAAGCACCTAAAGCATGACTCAGATGTTCTTCCCTTTTTCAAGTATCTTGGGAAGGTGATTACTGATTGGTACTACAAGGAATTAGAAGCCAATTATGACATGAACCAGCGTATGCCACCACTGATGGGCGATATCATCACGTTAAAGCATGCAAGAGCTCCATACACACCAAAGATGTTTGAGTTATTTCAGAAAGAATATGAAGCATGTTTAAATCTAGTGGTAAAGGATTGCACGGAGAGTGGACCATTGTATACTTATAAAGTTAGCATATATGAACAAGTACTTGAGTTTAAGGTTACTTTTGATTCTTCTAATGAGACAATCAGTTGCAGCTGCATGAAGTTTGAGTATGTGGGAGTCTTATGTTGCCATGCATTAAAAGTTCTTGACTATAGGAACATAAGGATAGTTCCAACCCGGTACATTTTAAAGAGATGGACAAAAGATGCTAGAGCTTGA 2619 0.3887 MLHVSVTERTAPNDSKPYRKFPTVLPIRISSQIVFCCYYILPPCLPFVHLGHRSMEGTEPDIKTHPLKDAENECSISPRVEINMGQEGQIQNPNDSSIAVSNKVIDTENECTSSNDCPVDHCQMEINDECHTSKSNNCHEDKFHINVGSRQLCQNPCTCSVDISRTSTDIKSEEEIYVAPKIGMEFESEDHAYNCYGKYAVLKGFSIRKDFVNKSRINGAVVSRRYTCYRQGYRLNKNSTNLRRFQQETRTGCLAHMTIARQLNGKFRVTHFETEHNHEFVTPCTAHMLPSQKRLSFAQAVEANLIESRLDGVPKLGMGFDSEEHAYDFYNAYAGHVGFSVRKDYVNRSKVDGAVASRRFTCFREGFRRKDKRDTNVKRPRKETRIGCLAQLVISRQPDGRYHVTHFEEKHNHELVAAGRVHMLRSQKRLAATQVEYNIVDGSTVLPKSVSESNCKTVEHLDDLDYGSAGYEYKLPFKCTREMKEGEIEKIKHHFQIKQSKNPSFFYAFQLDADDQITNIFWADTKMIVDYSDFGDVVCFDSSYKYHRDFRPFAPFLGINNHQQMTIFGAALLYNKSVESLKWLFRVFIEAMSGSKPKTFFTDQDAITAEAIKDVLPQTNHRVCVWHVYQDALKQLNHISVGSGSFINDLRSFFFYHDEEEDFANAWNALMDKYELWGNEWLHQIYESRDQWAIAYGRQFFCADIVSMLLRENLTDNLKKHLKHDSDVLPFFKYLGKVITDWYYKELEANYDMNQRMPPLMGDIITLKHARAPYTPKMFELFQKEYEACLNLVVKDCTESGPLYTYKVSIYEQVLEFKVTFDSSNETISCSCMKFEYVGVLCCHALKVLDYRNIRIVPTRYILKRWTKDARA* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0430 872 Pfam FAR1 DNA-binding domain 196 281 IPR004330 -
Apr6g0430 872 Pfam FAR1 DNA-binding domain 328 416 IPR004330 -
Apr6g0430 872 ProSiteProfiles Zinc finger SWIM-type profile. 817 853 IPR007527 GO:0008270
Apr6g0430 872 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 130 297 IPR031052 GO:0006355
Apr6g0430 872 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 307 871 IPR031052 GO:0006355
Apr6g0430 872 Pfam MULE transposase domain 537 630 IPR018289 -
Apr6g0430 872 SMART 26again6 828 855 IPR006564 GO:0008270
Apr6g0430 872 Pfam SWIM zinc finger 806 852 IPR007527 GO:0008270
Apr6g0430 872 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 130 297 - -
Apr6g0430 872 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 307 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0430 Apr-Chr6 4959934 4965152 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr6g0430 MULE 4.3e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0430 K17604 - gmx:102659753 1371.3