Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0408 ATGATAACTACACAACTTCATGATCAACGTGTTGTCCTCATTAATCAAGACTCGTTTTATTACTCATTAAGTGGCAAGACGCTAGAGAAAGTTAATGAGTACAACTTTGATCATCCTGATGCCTTTGATACAAAGCTTATGCTTTCAAGTGTGGAGAAATTAAAATGTGGACAACCTGCTATTATACCAAATTACGATTTCAACAGTCATAAGAGAATTGAACCTGCACGTCAGGTTCACCCTGCAGATATCATAATTTTGGAAGGAATATTAGTTCTTCATGATTCTCATGTTCGTGATCTTTTGAACATGAAGATCTTTGTTGATGAAGATTCCGATGTGCGCCTTGCACGAAGGATTCAACGTCTCACTATTGAACGTGGGAGGAATATTCAAAATGTTCTAGATCAATATTCCAGATTTGTAAAGCCCAGTTTTGAAGATTTTGTACTACCAACAAAAAAGTATGCCGATATTATCATCCCACGTGGAGGAGATAATGATGTTGCCATTGACTTAATAGTACAAAACATACGTATGAAGCTTGGCCAACATGATCTGTGTAAAATATATCCCAATATTTTTGTTATGTGTTCAACTTTTCAGGTCAAGGGAATGCATACTCTCATCCGTGATGTCAAGGCAACAAAGCATGACTTTGTTTTCTACTCAGATCGTCTCATTAGACTGGTTGTTGAGCATGGATTGGGTCACCTTCCTTTTACCGAAAAGCAAATCACAACACCAACAGGGTCTATATACTCCGGTGTAGTTTTTTGTAGCAGGCTATGTGGAGTATCAGTCATTAGAAGTGGAGAAAGCATGGAAAATGCATTAAGAGCATGCTGTAAGGGAATCAAAATTGGTAAAATCCTTATCCATGGACATGGTACAAACGGTCGACAGAAACTCCCATCAGACATTGCTAGTCGTCATGTGTTGCTACTTGATCCAGTTCTGGCCACAGGAAATTCTGCAGTGAAAGCTATCTCTCTGCTTCTCAAGAAGGGTGTACCAGAATCTAATATTATATTTCTAAATTTAATAGCAGCACCAAATGGAATAAACGCTGTTTGTGAGAGATTTCCAATGATAAAACTTGTAACATCAGAGATTGATGCATCATTGAATGAGAATTCTCATGTGATCCCTGGCTTGGGTGAGTTTGGTGATCGTTACTTTGCCACTGATGATTAG 1197 0.3818 MITTQLHDQRVVLINQDSFYYSLSGKTLEKVNEYNFDHPDAFDTKLMLSSVEKLKCGQPAIIPNYDFNSHKRIEPARQVHPADIIILEGILVLHDSHVRDLLNMKIFVDEDSDVRLARRIQRLTIERGRNIQNVLDQYSRFVKPSFEDFVLPTKKYADIIIPRGGDNDVAIDLIVQNIRMKLGQHDLCKIYPNIFVMCSTFQVKGMHTLIRDVKATKHDFVFYSDRLIRLVVEHGLGHLPFTEKQITTPTGSIYSGVVFCSRLCGVSVIRSGESMENALRACCKGIKIGKILIHGHGTNGRQKLPSDIASRHVLLLDPVLATGNSAVKAISLLLKKGVPESNIIFLNLIAAPNGINAVCERFPMIKLVTSEIDASLNENSHVIPGLGEFGDRYFATDD* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0408 398 PRINTS Uridine kinase signature 12 23 - -
Apr6g0408 398 PRINTS Uridine kinase signature 57 72 - -
Apr6g0408 398 PRINTS Uridine kinase signature 113 123 - -
Apr6g0408 398 PRINTS Uridine kinase signature 127 138 - -
Apr6g0408 398 PRINTS Uridine kinase signature 149 162 - -
Apr6g0408 398 CDD PRTases_typeI 263 369 IPR000836 -
Apr6g0408 398 Pfam Phosphoribulokinase / Uridine kinase family 24 170 IPR006083 GO:0005524|GO:0016301
Apr6g0408 398 CDD UMPK 1 179 IPR000764 -
Apr6g0408 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 174 IPR027417 -
Apr6g0408 398 Pfam Uracil phosphoribosyltransferase 199 396 - -
Apr6g0408 398 SUPERFAMILY PRTase-like 184 396 IPR029057 -
Apr6g0408 398 PANTHER URIDINE KINASE-LIKE PROTEIN 5 1 394 - -
Apr6g0408 398 Gene3D - 185 396 IPR029057 -
Apr6g0408 398 Gene3D - 1 184 IPR027417 -
Apr6g0408 398 PANTHER URIDINE KINASE 1 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0408 Apr-Chr6 4677339 4682725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0408 1 398 PRT Gene Family AT3G27440 75.124 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0408 K00876 - gmx:100803453 707.983