Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0375 ATGGTCGCTGCCAAGAAAACAAAGAAAACCCACGAGAGTATTAACAACAGGCTCGCTCTTGTGATGAAGAGTGGGAAATATACTTTGGGTTATAAGACGGTTCTCAAATCCCTCAGGAGCTCCAAAGGGAAACTGATTATCATTGCCAACAATTGCCCACCATTGAGGAAGTCTGAGATAGAGTATTATGCCATGTTGGCGAAGGTTGGAGTTCATCATTATAATGGAAACAATGTGGATTTGGGCACTGCATGTGGCAAATATTACAGGGTGTGCTGCCTCAGCATTATTGATCCTGGTGATTCGGATATCATCAAGACAATGCCTAGCGAGCAGTAG 339 0.4366 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTMPSEQ* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0375 112 Gene3D - 2 108 IPR029064 -
Apr6g0375 112 Hamap 50S ribosomal protein L30e [rpl30e]. 12 109 IPR000231 GO:0003723|GO:0003735|GO:0022625
Apr6g0375 112 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Apr6g0375 112 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Apr6g0375 112 PANTHER RIBOSOMAL PROTEIN L30 1 112 IPR039109 GO:0003723
Apr6g0375 112 SUPERFAMILY L30e-like 13 107 IPR029064 -
Apr6g0375 112 PANTHER 60S RIBOSOMAL PROTEIN L30 1 112 - -
Apr6g0375 112 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0375 Apr-Chr6 4273115 4275658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0375 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 85.714 5.89e-71 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0375 K02908 - ini:109159740 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2619 4 34957818 34959613 Apr6g0375 6 4273115 4275658 PCT