Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0366 ATGTTCCCTTACAGTTCCACCCCTTACCCTTCCTTCCCTTCATCTTCTTCTTCTTCATACCCTCCTTTTCCTTTCCTCAACCCTGAACATGCTTCAGCTAGCAACACTCTTCTTCATGATCCACTGTCTGTTCCTTACATACCAACTCATAACCCTCCAAACATCCAAGAAACACTGACCAATTTTCCACTCTCAGATCATAACTGCGGTGGTGGTGGTGGTTCTACAATGACCAAACAAGACCCAAGTGGTGGTGGTAGTGGTGTTCCTCACTATGGCATTTCTTGTTTCCTAACAAAGAGGCCAGCTAAGAAAGACAGACACAGCAAGATTTACACCTCTCAGGGTTTGAGGGACAGAAGGGTGAGGTTGTCCATTGATATTGCTCGCAAGTTCTTTGATCTTCAAGACATGTTAGGGTTTGATAAAGCCAGCAACACCCTTGAGTGGCTCTTCAACAAGTCAAAGAAAGCAATTAAGGAGCTAGCAAGGAGCAAGCACAGCAACAACAACAACAATAGTGAAGAAGGAGCCAAGAGCTTTTCTTCTTCATCTGAGTGTGATGATGACTGTGAAGTGATTTCTGGGATCCAGCAGCAGCAACAACAACAACTCATCACTTGTGATGCTGCTACTCCAAACAACCTACAACAAGGGTTAGATTCAAATGACAACAAGTCAACAACGTTGATGGCTGCAAGAGAGAGGATGAAGTTGAAAAGGTCACAGAAGGAACCTGCAAAGATTAAGGAGTCAAGGGAAAAAGCAAGAGCTAGAGCAAGGGAAAGGACCAGTAACAAGATCATGTGCAATGTTAACACCAACACCAACTTGAAGAAAAAGTGCCCTGCAATTGAAAACCACCCTCAAATCATGCATCAATCGAGGTCACCAAGTGACCACCCTCACCACCTTGTGGGAAGTGAAGCACCTCGAGATGACTTCAATGTTATTGAGGAATCCATTGTGATCAAGAGAAAGTTGAAGCCATCGTTGATGTCTTCTTCTCATCATCATCACCAAAACCTTGTGATCCCTAAGGAAGCTGCAAGTTTCAACAACGGTGACTACCACCCCTTCCCCAATTTGTCTCCAAATTGGGATGCTAATGGTTCCACTGGCCGCTCCAACTTTTGTGCCATAGCTAGCATGAATCTATCCACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTTTACATTAG 1221 0.4455 MFPYSSTPYPSFPSSSSSSYPPFPFLNPEHASASNTLLHDPLSVPYIPTHNPPNIQETLTNFPLSDHNCGGGGGSTMTKQDPSGGGSGVPHYGISCFLTKRPAKKDRHSKIYTSQGLRDRRVRLSIDIARKFFDLQDMLGFDKASNTLEWLFNKSKKAIKELARSKHSNNNNNSEEGAKSFSSSSECDDDCEVISGIQQQQQQQLITCDAATPNNLQQGLDSNDNKSTTLMAARERMKLKRSQKEPAKIKESREKARARARERTSNKIMCNVNTNTNLKKKCPAIENHPQIMHQSRSPSDHPHHLVGSEAPRDDFNVIEESIVIKRKLKPSLMSSSHHHHQNLVIPKEAASFNNGDYHPFPNLSPNWDANGSTGRSNFCAIASMNLSTGLQIFGKSWEECTNPRLH* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0366 406 MobiDBLite consensus disorder prediction 241 262 - -
Apr6g0366 406 ProSiteProfiles TCP domain profile. 104 162 IPR017887 -
Apr6g0366 406 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 18 405 - -
Apr6g0366 406 ProSiteProfiles R domain profile. 250 267 IPR017888 -
Apr6g0366 406 MobiDBLite consensus disorder prediction 164 183 - -
Apr6g0366 406 Pfam TCP family transcription factor 103 268 IPR017887 -
Apr6g0366 406 MobiDBLite consensus disorder prediction 165 181 - -
Apr6g0366 406 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 405 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0366 Apr-Chr6 4148100 4151955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0366 100 370 TCP Transcription Factor Family AT1G67260 34.173 5.73e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Apr6g0366 TCP 8e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0366 - - gmx:100801549 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0366 6 4148100 4151955 Apr9g2889 9 35803496 35804859 ECH
Apr6g0366 6 4148100 4151955 Apr6g0366 6 4148100 4151955 ECH
Apr4g2614 4 34905179 34906808 Apr6g0366 6 4148100 4151955 ECH