Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0347 ATGGAACGAGTGGTGGTAACGGTGAGTGGCTACCATGGCTCCGAGCGATTCAATCTCATCAAGCTGATTTCTCACGCAGGCGCCAATTACGTTGGCGCCATGTCCAAATCCATCACGCACCTGGTATGTTGGAAATTTGAAGGAAAGAAATATGATATTGCTCGGAAGTTTGGAATGCATGTAGTTAACCACCGATGGATTGAAGACTGCATAAAAGAGGGAAGGCGTGTCCTAGAAGATACTTATACCTGGCAAAGTGGTCATGAAGTAGGGCCGTTGTTGCTGGAAGTTCCACTCATTGTTCGAGCAAGTAGCTTGACAAAGAATAAAGTGGTTAGTGACAGGTTACATGATACTGGGTCTGAAAAGCGAGAAAACAACTTCAGTCCTGGAGCTTCTGGAACTTCTGTTTCGGAAGATTCTTGTTTAATGAAAAGGCATGAGGAGTCAAGTTCGTATTCAGCTAGATTGTCAAGGAAAGGAAAAAGAAATATTTGCAACATTAATGGAGTTAGTAGTGTGGCTGGACCTTCTCGTAAAGGAAGAAGACTTGCAACAAATTTTGTTGATGAAGTGGTGTTGGATCCTCCAAATTTGGATTTAAGCCCAGAGGACCACCTTTTTAGAATGGATAGACTACACACTAATGCTGCAGCTACCTCTAGCCTTTCTGGTGGTGTCAATAGTAACAATATTCTTGAAAATAGTCAAGGACCCGTTGCTAGATTAAGTAATGGAAGTGAAACTATCAACGGAGGTTCAGATAATATTGAACAGTTCAAAGATTTAAGTCATATGTCTGCGGTATCTACGAATAGACATTCAACTTTTATTGTAGAAGATCCCCTACCTGAGGCAGAAACATCAATAGATTTATGTTCCGGTGATGATGAAAAGTTCACAGATGGTGATCAGGTTGATAGTGTTGCTCGCTTACCTACTTCAACAGAGATGTCATGCGTTATATGTTTCACAGATTTTAGCTCAACAAGGGGAATTCTGCCATGTGGTCATCGATTTTGTTTTCCATGCATCCAGAGTTGGGTTCATCATAGGACTGCTATGGGAAAAATATCAACCTGCCCTTTGTGCAAGGCAAGTTTTGTGATGATTAAGAAAGTTGAGCATGCAGTAACCACTGATCAAAAAGTGTACTCCCAGACAATCCCATGGGACAATTCAGCCTCAGATATTTTTCTCCCCATGGATCCTGAATTATCAGATAATATCTTTGAGTCCCCACAAGCTGGCGCTTGTGTAGTTTGCCTTGGTAGGGAACCTGAGGATCTCCTCGAGTGTTGTGACGTTTGCCGGACTCGAAGGATCCATTCCTATTGCATGGACCCTCCTTTACGGCCGTGGACATGCAGTCACTGCAAGGAACTTCGGATGCTGTATCGTAATCACTCCTATTAG 1416 0.4266 MERVVVTVSGYHGSERFNLIKLISHAGANYVGAMSKSITHLVCWKFEGKKYDIARKFGMHVVNHRWIEDCIKEGRRVLEDTYTWQSGHEVGPLLLEVPLIVRASSLTKNKVVSDRLHDTGSEKRENNFSPGASGTSVSEDSCLMKRHEESSSYSARLSRKGKRNICNINGVSSVAGPSRKGRRLATNFVDEVVLDPPNLDLSPEDHLFRMDRLHTNAAATSSLSGGVNSNNILENSQGPVARLSNGSETINGGSDNIEQFKDLSHMSAVSTNRHSTFIVEDPLPEAETSIDLCSGDDEKFTDGDQVDSVARLPTSTEMSCVICFTDFSSTRGILPCGHRFCFPCIQSWVHHRTAMGKISTCPLCKASFVMIKKVEHAVTTDQKVYSQTIPWDNSASDIFLPMDPELSDNIFESPQAGACVVCLGREPEDLLECCDVCRTRRIHSYCMDPPLRPWTCSHCKELRMLYRNHSY* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0347 471 Gene3D BRCT domain 1 83 IPR036420 -
Apr6g0347 471 SMART ring_2 320 364 IPR001841 -
Apr6g0347 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 389 IPR013083 -
Apr6g0347 471 ProSiteProfiles Zinc finger RING-type profile. 320 365 IPR001841 -
Apr6g0347 471 SMART BRCT_7 1 74 IPR001357 -
Apr6g0347 471 Pfam twin BRCT domain 4 66 IPR001357 -
Apr6g0347 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 470 IPR013083 -
Apr6g0347 471 Pfam Zinc finger, C3HC4 type (RING finger) 320 364 IPR018957 GO:0046872
Apr6g0347 471 MobiDBLite consensus disorder prediction 125 140 - -
Apr6g0347 471 PANTHER F5A8.9 PROTEIN 1 468 - -
Apr6g0347 471 ProSiteProfiles BRCT domain profile. 1 84 IPR001357 -
Apr6g0347 471 SUPERFAMILY RING/U-box 311 372 - -
Apr6g0347 471 ProSitePatterns Zinc finger RING-type signature. 336 345 IPR017907 -
Apr6g0347 471 SUPERFAMILY BRCT domain 2 85 IPR036420 -
Apr6g0347 471 SUPERFAMILY FYVE/PHD zinc finger 413 462 IPR011011 -
Apr6g0347 471 MobiDBLite consensus disorder prediction 114 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0347 Apr-Chr6 3842885 3847578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0347 38 90 Core DNA Replication Machinery Family AT4G02110 46.296 5.93e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0347 - - gmx:100815034 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0347 6 3842885 3847578 Apr6g0347 6 3842885 3847578 ECH