Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0325 ATGAAGGTTCGATCGTTGAAGCTGAGGGAGGCCCACGCCAACAAGGGTGGTCGTCGATCCTTCTGCTCCATCTTGTGGGACCAGCAAGCCCGGCATCTGGTCACCGCCTCCTCTTCCGACGTCTCCATCTCCATTCACGACCCTCTTCTCCCCTCCGCCACTCCCAAAATCCTCCGTCACCACCGTGACGCTGTCACCTCCTTGGCTCTTAGCCCGAACTCCACTTGCCTCGCTTCCGGTTCCGTCGATCACTCCGTCAAACTCTACAAGTTTCCCGGAGGGGAATTCGAGACAAATATTACGAGGTTTACGCTTCCAATTCGTTCTCTAGCGTTTAACAAATCAGGGAGCATGCTAGCTGCAGCTGGTGATGACGAGGGCATCAAGCTGATTAACACAGTTGATGGTTCTATTGCGAGGGTTCTGAAAGGGCACAAAGGGTCCGTCAGTGGCTTAGCATTCGACCCCAATGGAGAATACTTAGCCTCTCTGGATTCAACTGGAACTGCTATTTTCTGGGAGCTTCATTCTGGGAGAATCGTTCATAATCTCAAAGGCGTAGCTCCTGACACAGGGGTAGACGTTTCCACTATGAATGTTCTTTGCTGGAGTCCTGATGGCGAGACCTTGGCGGTTCCCGGGTTGAGAAATGATGTGGTGATGTATGATAGGGACACTGCTGAAAAGTTGTTTTCTTTGAGAGGTGATCATGTAGAACCTATTTGTTTCTTGTGTTGGTCACCCAATGGGAAGTACATTGCTACATCAAGTTTGGACAAGCAGGTTCTGATCTGGGATGTTAGTAGGAAGCAGGACATTGATAGGCAGAAATTTGATGAGAGAGTTTGTTGCATGGCTTGGAAGCCAATTGGGAATGCCTTGGCTGTTATGGATGTTATGGGGAAGTATGGTGTTTGGGAGAATGTTATTCCTTCGTCGATGAAGTCTCCAACTGAGGATATTCCTGTGCAATATAAAAGTAATGGGCTTCTTTTGTTTGATGAGGAGGATCCTGAAAACAGTGCTGCGAGTGGAAGCTTGAGTGATATTGGTGAAAATAGTAATGTGGAGTCTGAGCCACTGAGCAGGAAGAGATTGCGTAAACAGTCTCTGAGTGAGGATAATTTTGATGAGGATGGAGGTGAGGAAATTGGTTTGTATCCTAAGGTTGAGTCTCACACGAAAAGAAATCGTTCAAACAAAGAAAATTTGGATAGTGGAAATGTGAGGTTTAGGAGCAACATGGTAACTTGCAAGCCAAAGATGCAGGAGACATTTCAACCAGGATCAACCCCTGTGCAGCCTGGGAAAAGGCGTTTCTTATGCTACAATATGTTTGGATGTGTGACCTCTATTGAACATGATGGATACTGCCATATTGAGATTGATTTTCATGATACCGGAAGCACTCCACGAGTTCCTTCAATGACAGATCATTTTGGATTTTCAATGGCGGCATTAAATGAGAATGGAAGTGTCTTTGCAAATCCTTGCAAGGGGGAGAAGAACATGAGCACCCTCATGTATCGTCCATTTAGTAGCTGGGCTAGTAATAGTGAGTGGTCTATGCGCTTTGAGGGAGAAGAAGTAAAGGTTGTTGCACTTGGTGCTGCTTGGGTGGCCGCAGTAACTAGTTTTAATTATCTTCGCATCTTTTCTGAGGGTGGTTTGCAGAGACATGTGATTTCGCTTGATGGGCCAGTGGTGACTGCATCTGGTTTCAAGGATCAGCTTGCAGTTGTCACTCATGCTTCTGATTGCCTTTCCTCGGGTGATCAGATGCTAGAGTTTAGATTGTTTAACGTACCTCATGGGACCCAACCCCTTCGAGGTCGCTTGCCATTGACTCCAGGTTCATTTCTAAGTTGGTTTGGATTTAGTGAAGAAGGCCAGTTGTGTTCATACGATTCGAAGGGTGTGCTAAGATCATATACAAGCCAATTTGGGGGTAGCTGGCTCCCACTCTTCAGTGCTATTAAAGAGAAGAAGTCAGATGAAAACTATTGGGTAGCGGGGTTGAATGCAAGCAAGTTATTTTGTGTGGTATGCAAAAAGCCTGACGCCTTCCCTCAGGTGATACCTAAACCAGTTCTTACTCCCCTGAGTCTATCATTTCCTCTTGCTTCCTCTGATTTGGGATTTGAGGCTCATGAAAACGAGTTTATGATGAACAGCATGCATCTATTTGAGATTCAGAGACGAATGGAGCAAATGGCTTCTGCCGGTCTGGACACTAGTGCACTTGATGATGATGCTTTCAATTTGGAAGCAGCACAAGATAAATGCATACTGAGGCTTATAGCATCCTGCTGCAACAGTGATAAGCTTGAGCGAGCTACTGAACTTGTGAAGCTTTTGTCACTGGAAAAATCAATGAGAGGTGCAATAAAACTCGTTACTGCTCTGAAGCTTCCAAACTTGGCCGAAAGGTTCAGCAGCATATTGGAGGAAAGGCTGCTTCTTGAAGCGAAAAAGGCTACAGAAACCAACCTCAGAGAAAACTGTGTTGCACCTATTACAGCTGATGCTCAACATAGCGGGAACGGAGCCCCAACTCAGACTGAAACATCAAATGCAGTTACTGTGTTATCCTTTCCAAATTTATCTGCTCCATCATTCATTAAGAAAGACAAAACACAAGCGGAACCTAAAGCTGGAATAAATAAAACTCTGGCAGTAAATGAAACTGTGAAGGCAAATCAGACATGGAGTGAAAACAAGGGGGGGAAGGTGGCGGATATGCGTCAAATGCAAGCTCCTAATCCACTTGATTCCTCTATTAACTCGTCAAATAAGCACGCACTCAACAAGTCAGAGACTAGTTTGGCACAGCCAAATCGGCCTTCTAATCCATTTTTGAAGTCTTCTATCAAATGA 2877 0.4539 MKVRSLKLREAHANKGGRRSFCSILWDQQARHLVTASSSDVSISIHDPLLPSATPKILRHHRDAVTSLALSPNSTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGSVSGLAFDPNGEYLASLDSTGTAIFWELHSGRIVHNLKGVAPDTGVDVSTMNVLCWSPDGETLAVPGLRNDVVMYDRDTAEKLFSLRGDHVEPICFLCWSPNGKYIATSSLDKQVLIWDVSRKQDIDRQKFDERVCCMAWKPIGNALAVMDVMGKYGVWENVIPSSMKSPTEDIPVQYKSNGLLLFDEEDPENSAASGSLSDIGENSNVESEPLSRKRLRKQSLSEDNFDEDGGEEIGLYPKVESHTKRNRSNKENLDSGNVRFRSNMVTCKPKMQETFQPGSTPVQPGKRRFLCYNMFGCVTSIEHDGYCHIEIDFHDTGSTPRVPSMTDHFGFSMAALNENGSVFANPCKGEKNMSTLMYRPFSSWASNSEWSMRFEGEEVKVVALGAAWVAAVTSFNYLRIFSEGGLQRHVISLDGPVVTASGFKDQLAVVTHASDCLSSGDQMLEFRLFNVPHGTQPLRGRLPLTPGSFLSWFGFSEEGQLCSYDSKGVLRSYTSQFGGSWLPLFSAIKEKKSDENYWVAGLNASKLFCVVCKKPDAFPQVIPKPVLTPLSLSFPLASSDLGFEAHENEFMMNSMHLFEIQRRMEQMASAGLDTSALDDDAFNLEAAQDKCILRLIASCCNSDKLERATELVKLLSLEKSMRGAIKLVTALKLPNLAERFSSILEERLLLEAKKATETNLRENCVAPITADAQHSGNGAPTQTETSNAVTVLSFPNLSAPSFIKKDKTQAEPKAGINKTLAVNETVKANQTWSENKGGKVADMRQMQAPNPLDSSINSSNKHALNKSETSLAQPNRPSNPFLKSSIK* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0325 958 CDD WD40 26 296 - -
Apr6g0325 958 SUPERFAMILY WD40 repeat-like 16 307 IPR036322 GO:0005515
Apr6g0325 958 MobiDBLite consensus disorder prediction 337 407 - -
Apr6g0325 958 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Apr6g0325 958 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Apr6g0325 958 MobiDBLite consensus disorder prediction 341 357 - -
Apr6g0325 958 MobiDBLite consensus disorder prediction 919 958 - -
Apr6g0325 958 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 931 - -
Apr6g0325 958 Gene3D - 2 97 IPR015943 GO:0005515
Apr6g0325 958 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Apr6g0325 958 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Apr6g0325 958 Gene3D - 98 194 IPR015943 GO:0005515
Apr6g0325 958 SMART WD40_4 135 174 IPR001680 GO:0005515
Apr6g0325 958 SMART WD40_4 7 47 IPR001680 GO:0005515
Apr6g0325 958 SMART WD40_4 51 90 IPR001680 GO:0005515
Apr6g0325 958 SMART WD40_4 177 223 IPR001680 GO:0005515
Apr6g0325 958 SMART WD40_4 93 132 IPR001680 GO:0005515
Apr6g0325 958 SMART WD40_4 226 266 IPR001680 GO:0005515
Apr6g0325 958 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Apr6g0325 958 Coils Coil 954 958 - -
Apr6g0325 958 Pfam Minichromosome loss protein, Mcl1, middle region 425 707 IPR022100 -
Apr6g0325 958 MobiDBLite consensus disorder prediction 382 405 - -
Apr6g0325 958 Pfam WD domain, G-beta repeat 140 163 IPR001680 GO:0005515
Apr6g0325 958 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Apr6g0325 958 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Apr6g0325 958 MobiDBLite consensus disorder prediction 358 375 - -
Apr6g0325 958 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Apr6g0325 958 MobiDBLite consensus disorder prediction 899 958 - -
Apr6g0325 958 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Apr6g0325 958 Gene3D - 195 308 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0325 Apr-Chr6 3571318 3576165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0325 59 269 U-box Gene Family AT2G33340 23.721 1.55e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0325 K11274 - gmx:100809300 1541.94