Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0324 ATGTCGAGAGAATTAGGAGCCAACAACGCCCCCTCACGCGCTGTGATAACGTGTGAGGCGTGTGAGAGTGCTCCTGCAGCGTTTCTATGTAAAGCTGATTCTGCTTCTCTGTGCTGTTCTTGCGATGCTGAAATTCACTCTGCTAACCCTCTTGCTCACCGCCACAACCGCGTCCCTATTGTTCCCTCTGTTGGGGTTGAAGCTGTTGTTTATGGAGATGGCGTAGCAGAAGCTGCTTCATGGTTGTTGTATGATAATAGAAGTGGTGATGATGAGTTCTTCTTTGATGAGAATTTTGATGATAATCAATGCCATGAGTATGAGTTTGGGTTGAGTAGTGCTTCTCACCAGAGCTTTCAAGTGAATCAGATGAAAAATCAGGAGGCACAGCATTTTCCACTCGATGTGGAGTTTGAGTCCCCAAAACCTGTGCTCAGTTACAATGGTTCTCTTGGTCTAAGTGCCTCAGTTTCATCAACGGATTATAGCATTGTGCCAGAATCAACAATCAGCGAGCTCTCAAATTCTCAAGGCACATTGGACCATTCTTCTGAACCTCCCAATCCCGTTAATTTGATGCCTTCTTCTCTTACTTACAGACAAGCTAGAGTTCTAAGATATATAGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATCAGATATGCTTCAAGGAAGGCCTATGCTGAGATTAGACCTCGTGTAAAAGGTCGATTTGCCAAGAGAAACAATACTGAAGCTGAAATGGACCACATATTCTCCTCAACTCTATTTACTGAAGCTGGATATAGCATCGTTCCCTCTTTCTGA 810 0.4333 MSRELGANNAPSRAVITCEACESAPAAFLCKADSASLCCSCDAEIHSANPLAHRHNRVPIVPSVGVEAVVYGDGVAEAASWLLYDNRSGDDEFFFDENFDDNQCHEYEFGLSSASHQSFQVNQMKNQEAQHFPLDVEFESPKPVLSYNGSLGLSASVSSTDYSIVPESTISELSNSQGTLDHSSEPPNPVNLMPSSLTYRQARVLRYIEKKKTRKFEKKIRYASRKAYAEIRPRVKGRFAKRNNTEAEMDHIFSSTLFTEAGYSIVPSF* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0324 269 ProSiteProfiles CCT domain profile. 200 242 IPR010402 GO:0005515
Apr6g0324 269 CDD Bbox1_BBX-like 18 60 - -
Apr6g0324 269 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 269 IPR045281 GO:0009909
Apr6g0324 269 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Apr6g0324 269 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 8 269 - -
Apr6g0324 269 Pfam B-box zinc finger 16 60 IPR000315 GO:0008270
Apr6g0324 269 Pfam CCT motif 200 242 IPR010402 GO:0005515
Apr6g0324 269 SMART bboxneu5 13 60 IPR000315 GO:0008270
Apr6g0324 269 MobiDBLite consensus disorder prediction 173 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0324 Apr-Chr6 3564603 3566457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0324 2 269 C2C2-CO-like Transcription Factor Family AT3G02380 46.774 2.21e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Apr6g0324 zf-B_box 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0324 - - aprc:113867690 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0324 6 3564603 3566457 Apr4g2592 4 34682731 34685223 PCT