Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0323 ATGTTGAAGGAAGGCACCGCCAACAACAGTGGTGGCGGAACTACCAACTGGTCACGTGTCTGTGACACGTGCCGGTCAGCAGCATGCATAGTCTATTGCCATGCTGACTCCGCATATCTATGCTCAACTTGTGACGCTCGAATTCACGCGGCCAACCGTGTGGCTTCGAGGCACGAGCGAGTGTGGGTATGCGAAGCGTGTGAGCGTGCGCCCGCCGCGTTTTTATGCAAAGCGGATGCAGCTTCGCTTTGCTCATCTTGTGACGCTGATATTCACTCAGCGAACCCTTTGGCTAGTCGCCACCACCGTGTCCCTATTCTTCCGATAATAGGGTTACTGTTTGGAGAACAAGAACATGGGTTCATGAATGAGGTTGAAGAGGAAGAGAATGAAGAAGGGGTAGTTTGTGAAGACGAAGATGTGGCTGAAGCAGCGTCGTGGTTGTTGCCGAATCCTGTGAAGAACGATGAATTAGGGGAAGAAGAAAATGGATTTTTGTTTGGAGATGAGTATTTGGAGCTTGTGGATCATTGTAATTCTTGTGGGCATAACAATAACCAGTTTAGTGATGTTGGTTTTGGGGATCACCACCAAAATTACAACACTGTTGCTCATCATCAGAACTATGCGGTGGTTCCAGTTCAGTGTGGAGGAGAAGTTGTGGGTCAGGTTCAACACCATTTTCAACCCGGTTTGGATTTTGACTCTTCAAAAGCTGGGTTCAGTTACGATGGTTCTCTTAGTCAAAGTGTTTCGGTTTCATCAATGGATGTTGGCGTTGTACCAGAATCAACAATTAGTGACATCTCAATATCCCATTCAAAGTCACCAATAGGGACCAGTGACCTATTTCCTCCTCTTCCAATGCCTTCACATCTCACACCAATGGATAGGGAAGCCAGAGTGCTAAGATACAGAGAGAAAAAGAAAACAAGAAAGTTTGAAAAGAAAATTAGATACGCCTCAAGAAAGGCCTATGCAGAAACTAGACCTCGTATAAAGGGTCGATTTGCAAAGAGAACTGATACAACACTAATCACTGAAGCTGGATGTAGCATTGTTCCCTCTTTCTGA 1074 0.459 MLKEGTANNSGGGTTNWSRVCDTCRSAACIVYCHADSAYLCSTCDARIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPIIGLLFGEQEHGFMNEVEEEENEEGVVCEDEDVAEAASWLLPNPVKNDELGEEENGFLFGDEYLELVDHCNSCGHNNNQFSDVGFGDHHQNYNTVAHHQNYAVVPVQCGGEVVGQVQHHFQPGLDFDSSKAGFSYDGSLSQSVSVSSMDVGVVPESTISDISISHSKSPIGTSDLFPPLPMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDTTLITEAGCSIVPSF* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0323 357 CDD Bbox1_BBX-like 20 63 - -
Apr6g0323 357 SMART bboxneu5 64 106 IPR000315 GO:0008270
Apr6g0323 357 SMART bboxneu5 16 63 IPR000315 GO:0008270
Apr6g0323 357 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Apr6g0323 357 CDD Bbox1_BBX-like 63 106 - -
Apr6g0323 357 ProSiteProfiles Zinc finger B-box type profile. 59 106 IPR000315 GO:0008270
Apr6g0323 357 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 16 346 - -
Apr6g0323 357 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 346 IPR045281 GO:0009909
Apr6g0323 357 Pfam B-box zinc finger 61 106 IPR000315 GO:0008270
Apr6g0323 357 Pfam CCT motif 298 340 IPR010402 GO:0005515
Apr6g0323 357 ProSiteProfiles CCT domain profile. 298 340 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0323 Apr-Chr6 3542602 3544619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0323 1 357 C2C2-CO-like Transcription Factor Family AT3G02380 54.545 1.57e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Apr6g0323 zf-B_box 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0323 - - gmx:100782635 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0323 6 3542602 3544619 Apr6g0323 6 3542602 3544619 ECH