Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0322 ATGACCATATATTGTTCCCGAGCACTTATGTCACACTTCACTCTCAACAGAAAAACCAAACACAAATCAAAAGCCTCACCTTCACCATCTTTCACCGTGGTTGATTTGAATCCACAGCAACATGCCTTTGGTATTAACCAAACAAGCCTCAGCGACATAATCAAAGGAAAAAAGCTCAAGAACCTTAAAAACATTGGTGGGGTTGAAGGGGTGGCTACAGCCCTTGAAACCAACGTTGAGTATGGTATCAAAGGTGATGATGATGCTGAAGACATCTCACGTAGGAAACAAGTGTTTGGTTCCAACACTTACAACAAACCACCCGCCAAAGGTTTCTTTCACTTTGTGGTTGAGGCCTTTAAGGATGTCACAATTCTCATCCTCTTGGCTTGTGCAGCTCTTTCCCTTGGCTTTGGCATCAAGGAGCATGGCCTCAAAGAAGGTTGGTATGATGGTGGAAGCATTTTTCTTGCTGTGTTTATTGTCATTTCCTTGTCTTCAATAAGCAACTTTAGACAGAATAGACAATTTGACAAGTTGTCTCAAGTGAGCAATGATATACAAATTGACGTGGTGAGAAGTGGGAGGAGGAAAATAATCTCAATCTTTGAGATTGTAGTTGGTGATGTCATTTGCTTGAAGATTGGAGATCAAGTACCGGCAGATGGGTTATTCATAGAAGGACATTCACTAAGCGTGGATGAATCAAGCATGACTGGGGAGAGTGATCATGTTGAGGTTAATAGACACCACCACCCATTCTTGTTCTCTGGCACAAAGGTTGCAGAAGGGTATGCTAAAATGCTTGTTACTTCAGTTGGTATGAACACAACATGGGGCCAAATGATGAGCTCAATTAGCCGTGATATTGATGAGCAGACCCCTTTGCAAGAAAGGCTTAACAAACTTACATCAGCCATTGGGAAGGTAGGTTTGCTTGTGGCTTTCCTTGTGCTTGTTGTTTTGTTGGTTCGTTACTTCACAGGTAACACAGAGGATGATAAAGGGGTTAGAGAGTTCAATGGAAGCAAGACCAAGTTTGATGACATAATGAATGCTGTTGTGGGAATTGTTGCTGATGCTGTTACCATTGTCGTTGTTGCAATCCCTGAGGGTCTGCCACTAGCTGTTACTCTAACACTCGCTTATTCAATGAAGAAAATGATGGCTGACCAAGCAATGGTGAGAAAGCTCTCTGCATGTGAGACCATGGGGTCTGCCACCACAATTTGTACTGATAAAACAGGCACTCTCACACTCAACCAAATGAAGGTGACCAAGTTTTGGCTTGGCCTAGAACCTGTGGCAGAAAGTGCGTACTCAAAAGTTGCACCATTTGTTCTTCAGCTGATCCAAGAAGGAGTGGCTCTTAACACAACAGGTAGTGTGCACAAGTCTAACAAATCAGGTTCTGAATTTGAGTTTTCAGGTAGTCCCACAGAAAAAGCAATCCTATCATGGGCTGTCTTGGAATTGAACATGGAAATGGAGCACATGACAAGAAGCTGTTCTATCATTCATGTTGAGACCTTCAACTCAAAGAAGAAAAGAAGTGGAGTTTTGTTGAGAAGAAAAGCAGACAACACAGTGAATGCACACTGGAAAGGAGCAGCAGAAATGGTACTAAAGAAGTGTTCAAAATACTATGATGCTGCTGGCATTGTGAAAGATCTTGACAATGATAGCATGTTGAAGTTTGAAAGCATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGTATCGCTTTTGCACATGTAGAGGTTGAAGAAAAAGAACTAGGAGACGAAGAAGGCAACACAATGGTGAAAGACAATGGTTTAACCTTGTTAGGCCTTGTTGGTATTAAGGATCCATGTCGTTCAGAGGTGAAGACAGCTGTGGAAGCTTGCCAACAGGCTGGTGTAAATGTGAAAATGATCACAGGTGACAATGTTTTCACTGCAAAGGCTATAGCAACCGAATGCGGCATTCTTCGGCCTAATCAAGACACAGTTGGAGCAGTGGTTGAAGGAGAGGAGTTTCGAAATTACACACCTGAAGAGAGATTGGAGAAAGTGGATAAAATCTGTGTTATGGCAAGATCCTCTCCTTTTGACAAACTTCTAATGGTTCAATGCCTAAAACAAAAGGGTCATGTAGTTGCTGTCACTGGTGATGGCACAAATGATGCACCAGCACTCAAGGAAGCTGATATTGGTCTCTCTATGGGAATTCAAGGCACTGAAGTGGCCAAAGAGAGTTCAGATATTGTCATATTGGATGACAATTTTGCCTCAGTTGTCACAGTGTTAAGGTGGGGAAGATGTGTTTATAATAACATCCAAAAGTTCATTCAGTTTCAATTGACAGTGAATGTTGCAGCACTTGCTATCAACTTTGTAGCAGCAGTTTCAGCAGGTGAAGTGCCACTCACAGCAGTGCAATTATTATGGGTGAACTTGATCATGGACACATTAGGTGCATTAGCTCTTGCGACAGAAAAGCCTACCAAGGAGTTGATGGACAAACCACCAGTAGGTAGAACAAAACCTCTTATCACCAATGTTATGTGGAGGAATCTATTAGCTCAAGCTTTGTACCAGATAACAGTTTTGCTGACCCTTCAATTCAAAGGTGAGTCTATCTTTGGTGTGACATCAGGAGTAAATGACACATTGATTTTCAATACATTTGTTCTTTGCCAAGTGTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAAGAATGTTTTCAAAGGCATACATAGGAGCAAGTTGTTTTTGGGAATTATTGGTATAACAATAGTCCTTCAGGTGGTGATGGTTGAGTTTCTTAAGAAGTTTGCTGATACAGAGAGGCTAAATTGGGGGCAATGGGCTATTTGCATTGGTCTTGCTGCAGTTTCCGGGCCAATTGGTTGGGTTGTGAAGCTGATACCTGTCCCAGATAGACCATTACTCAATTTTTTGAGTATGAAGAGATGA 2964 0.4187 MTIYCSRALMSHFTLNRKTKHKSKASPSPSFTVVDLNPQQHAFGINQTSLSDIIKGKKLKNLKNIGGVEGVATALETNVEYGIKGDDDAEDISRRKQVFGSNTYNKPPAKGFFHFVVEAFKDVTILILLACAALSLGFGIKEHGLKEGWYDGGSIFLAVFIVISLSSISNFRQNRQFDKLSQVSNDIQIDVVRSGRRKIISIFEIVVGDVICLKIGDQVPADGLFIEGHSLSVDESSMTGESDHVEVNRHHHPFLFSGTKVAEGYAKMLVTSVGMNTTWGQMMSSISRDIDEQTPLQERLNKLTSAIGKVGLLVAFLVLVVLLVRYFTGNTEDDKGVREFNGSKTKFDDIMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPVAESAYSKVAPFVLQLIQEGVALNTTGSVHKSNKSGSEFEFSGSPTEKAILSWAVLELNMEMEHMTRSCSIIHVETFNSKKKRSGVLLRRKADNTVNAHWKGAAEMVLKKCSKYYDAAGIVKDLDNDSMLKFESIIQGMAASSLRCIAFAHVEVEEKELGDEEGNTMVKDNGLTLLGLVGIKDPCRSEVKTAVEACQQAGVNVKMITGDNVFTAKAIATECGILRPNQDTVGAVVEGEEFRNYTPEERLEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDKPPVGRTKPLITNVMWRNLLAQALYQITVLLTLQFKGESIFGVTSGVNDTLIFNTFVLCQVFNEFNARKMEKKNVFKGIHRSKLFLGIIGITIVLQVVMVEFLKKFADTERLNWGQWAICIGLAAVSGPIGWVVKLIPVPDRPLLNFLSMKR* 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0322 987 CDD P-type_ATPase_Ca_PMCA-like 92 850 - -
Apr6g0322 987 SFLD p-type atpase 393 770 IPR044492 -
Apr6g0322 987 SUPERFAMILY Calcium ATPase, transduction domain A 188 285 IPR008250 -
Apr6g0322 987 Gene3D - 90 287 - -
Apr6g0322 987 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 354 439 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr6g0322 987 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 690 798 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr6g0322 987 Gene3D - 421 618 IPR023299 GO:0000166
Apr6g0322 987 ProSitePatterns E1-E2 ATPases phosphorylation site. 413 419 IPR018303 -
Apr6g0322 987 Pfam haloacid dehalogenase-like hydrolase 408 731 - -
Apr6g0322 987 PRINTS P-type cation-transporting ATPase superfamily signature 234 248 - -
Apr6g0322 987 PRINTS P-type cation-transporting ATPase superfamily signature 411 425 - -
Apr6g0322 987 PRINTS P-type cation-transporting ATPase superfamily signature 611 622 - -
Apr6g0322 987 PRINTS P-type cation-transporting ATPase superfamily signature 633 643 - -
Apr6g0322 987 PRINTS P-type cation-transporting ATPase superfamily signature 717 736 - -
Apr6g0322 987 PRINTS P-type cation-transporting ATPase superfamily signature 741 753 - -
Apr6g0322 987 SMART Cation_ATPase_N_a_2 64 140 IPR004014 -
Apr6g0322 987 Gene3D - 118 962 - -
Apr6g0322 987 SFLD Haloacid Dehalogenase 393 770 - -
Apr6g0322 987 PRINTS H+-transporting ATPase (proton pump) signature 566 584 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr6g0322 987 PRINTS H+-transporting ATPase (proton pump) signature 717 733 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr6g0322 987 PRINTS H+-transporting ATPase (proton pump) signature 749 774 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr6g0322 987 SUPERFAMILY HAD-like 409 822 IPR036412 -
Apr6g0322 987 SUPERFAMILY Calcium ATPase, transmembrane domain M 66 974 IPR023298 -
Apr6g0322 987 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 58 974 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Apr6g0322 987 Pfam Cation transporter/ATPase, N-terminus 66 135 IPR004014 -
Apr6g0322 987 Pfam Cation transporting ATPase, C-terminus 802 972 IPR006068 -
Apr6g0322 987 Gene3D - 408 762 IPR023214 -
Apr6g0322 987 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 418 615 IPR023299 GO:0000166
Apr6g0322 987 Pfam E1-E2 ATPase 188 389 - -
Apr6g0322 987 PANTHER CALCIUM-TRANSPORTING ATPASE 2 967 - -
Apr6g0322 987 PANTHER CATION TRANSPORTING ATPASE 2 967 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0322 Apr-Chr6 3513912 3518158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0322 1 987 Primary Pumps ATPases AT3G22910 68.983 0.0 1308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0322 K01537 - gmx:100793918 1697.95