Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0311 ATGTCTCATCATTCCTCAAATCCCTTCGCATCCACTCATTCTGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTTGAAACTCGCTCTTCCGACCGTTCTCGCTCTTGTTGCTGCCACGACACTAACATAAACCCCTTTTCTGGGGTCGTTTGCGATCTTCACAACGGGGAATTAGGGTTAGGGTTTCGGACCAATACCCAAAATAACGAAGATAGGGCTTTTAATTTTTCGGTGGGTGATAATTCGGGTGGGCTTAGGGTTGTTGGGTTCGGTTCCGATTCGGATTCGAGTAGCGAGGAAGGTGAGGTTGATGTTGGTGGTGATGATGATAGGGCTGGGGGTGGGTTTGATGATTTCGATGTTCGATTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACCCTGAATGAGGGTTTTGAGTGGGAGGAGGTAGAGGAGAGGGTGAATGAGAGGGGAGATTTGAGCGTGGTGGTTGATGAGGTTGAAATTGACGGCCAATCGGTGGCGTCGGGGTTTACAAATGGTGGCGAGGATGACGATGAGGAGTTGGAGCCTGGCGAAGAAGCGTTGAGATACCTTGAATGGGAAATTCTCTTGGCTGTTAACAATTTGGAGAGGAATGGTGGGGTTGAACACGAGGGCAATGCCGATTCGTATTTAGCGGTACCAGATGGTTATATATACACAGCTGAGTACGATGTTCTTTTCGGGCAGTTTCTTGAGAATGAGAGTGCCTTGAAGGGTAGTCCTCCCGCTGCGAAAAGTGTTGTGGAGAATCTCCCCTTGGTGGAATTGACGAAGGAGGAGTTGCAGGGGAAGAATGTGGCATGCGCCATTTGCAAAGATGAGATTTTGTCTGCGGAGAAGGTGCGGAGGTTGCCCTGCTCGCACTGTTATCATGGAGACTGCATTTTGCCGTGGTTGAGTATTCGCAATACGTGTCCTGTTTGTCGGTTTGAGTTGCCCACGGATGATCCGGATTATGAGCAGAGGAAGGTCCGGAGGGCTGCTCATGATCTGTTGGAGCTTGCAGCACAGATGCAATTTTGA 1065 0.4958 MSHHSSNPFASTHSDSDSDSVSCFVTDLFETRSSDRSRSCCCHDTNINPFSGVVCDLHNGELGLGFRTNTQNNEDRAFNFSVGDNSGGLRVVGFGSDSDSSSEEGEVDVGGDDDRAGGGFDDFDVRLCWDSLCLEDQRTLNEGFEWEEVEERVNERGDLSVVVDEVEIDGQSVASGFTNGGEDDDEELEPGEEALRYLEWEILLAVNNLERNGGVEHEGNADSYLAVPDGYIYTAEYDVLFGQFLENESALKGSPPAAKSVVENLPLVELTKEELQGKNVACAICKDEILSAEKVRRLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDPDYEQRKVRRAAHDLLELAAQMQF* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0311 354 SMART ring_2 282 322 IPR001841 -
Apr6g0311 354 ProSiteProfiles Zinc finger RING-type profile. 282 323 IPR001841 -
Apr6g0311 354 SUPERFAMILY RING/U-box 270 330 - -
Apr6g0311 354 MobiDBLite consensus disorder prediction 1 20 - -
Apr6g0311 354 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 2 354 - -
Apr6g0311 354 MobiDBLite consensus disorder prediction 94 115 - -
Apr6g0311 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 329 IPR013083 -
Apr6g0311 354 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 354 - -
Apr6g0311 354 Pfam Ring finger domain 282 323 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0311 Apr-Chr6 3306626 3308303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0311 88 337 C3H Transcription Factor Family AT3G02340 40.000 5.22e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0311 - - gmx:100812037 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0311 6 3306626 3308303 Apr6g0311 6 3306626 3308303 ECH