Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0291 ATGGTTCGTCAAGCTGATTTAGTTATCATTGGTGTCTCTGTTGGTTTGGCCCTTGGAATTCTGATATCTTGCATCATATTTTTCGGCATAAGGTGGTACAAGAAAAGTGTTCGTCTTAGACAATCTGCAAATGAGTCTAGTGTAACAAGTACTCTTCCAATACGAACAAATGGACTGGGAACAAGTACTGACTTTAGTGCATCTCTCACTAGTTCAATAGCCACGTCAAGGTCAGAAAATTTAAAGAAAAATTCTCATTTTAGTTGGTGGAATCATCAAAACAAAGATCAGTTTGCTTCAGCATCAGGCATTCTAAAGTATTCATACAAAGAAATTCAGAAAGCCACACAAAGTTTCACGACTACCTTGGGACAAGGATCATTTGGCACAGTTTATAAAGCGACAATGCCTACAGGAGAGGTGGTAGCTGCAAAGGTGCTTGCGCCCAATTCCAAACAAGGGGAAAAAGAATTCCAAACAGAGGTGTTTCTACTTGGAAGACTGCATCACCGGAATCTTGTGAATTTGGTTGGATATTGTGTGGATAAAGGACAGCGCATACTGGTTTATCAGTACATGAGTAATGGGAGTTTAGCAAATCTGTTATATGGTGAAGAAAAGGTATTGAGTTGGGATGAAAGGCTACAAGTTGCTCTTGATATTTCACATGGAATAGAATATCTTCATGAAGGAGCAATCCCACCCGTCATACATCGTGATTTGAAGTCTGCCAACATATTGCTAGATCACTCAATGAGAGCTAAGGTTGCTGATTTTGGGCTCTCAAAGGAAGAGATCTTTGATGGCCGGAATTCTGGTCTTAAAGGTACATACGGTTACATGGATCCCGCATACATTTCCACAAGCAAGTTAACAACAAAGAGTGACATATACAGTTTCGGTATCATAATATTTGAGCTCATCACTGCCATCCACCCACATCAAAATTTGATGGAGTATATTAACCTTGCCACGATGGATCACGATGGTGTAGATGAGATACTTGACAAGCAACTTGTGGGAAAATGCAATCTTGAAGAAGTGAGGCAGCTTGCTAAAATTGGACACAAATGCTTGCACAAGTCACCTAAGAAACGCCCGTCTATAGGTGAGGTTTCGCAGGGTATATCTAGGATAAAGCAAAGGCGACAGCGCTGTGTAACGGAAGATAATTTATCATTTGCAAGCAACAACTTTTCACGAGCTGTGAGTCGATTAGAAGATCAACAGGTTGAACTAAGTAGGATGTCCACCATGAATCTGACAGAAACTGTATGA 1278 0.4045 MVRQADLVIIGVSVGLALGILISCIIFFGIRWYKKSVRLRQSANESSVTSTLPIRTNGLGTSTDFSASLTSSIATSRSENLKKNSHFSWWNHQNKDQFASASGILKYSYKEIQKATQSFTTTLGQGSFGTVYKATMPTGEVVAAKVLAPNSKQGEKEFQTEVFLLGRLHHRNLVNLVGYCVDKGQRILVYQYMSNGSLANLLYGEEKVLSWDERLQVALDISHGIEYLHEGAIPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKLTTKSDIYSFGIIIFELITAIHPHQNLMEYINLATMDHDGVDEILDKQLVGKCNLEEVRQLAKIGHKCLHKSPKKRPSIGEVSQGISRIKQRRQRCVTEDNLSFASNNFSRAVSRLEDQQVELSRMSTMNLTETV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0291 425 SUPERFAMILY Protein kinase-like (PK-like) 88 373 IPR011009 -
Apr6g0291 425 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Apr6g0291 425 Gene3D Transferase(Phosphotransferase) domain 1 193 402 - -
Apr6g0291 425 ProSiteProfiles Protein kinase domain profile. 117 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0291 425 SMART serkin_6 117 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0291 425 Gene3D Phosphorylase Kinase; domain 1 78 192 - -
Apr6g0291 425 Pfam Protein kinase domain 121 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0291 425 ProSitePatterns Protein kinases ATP-binding region signature. 123 145 IPR017441 GO:0005524
Apr6g0291 425 CDD STKc_IRAK 123 379 - -
Apr6g0291 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Apr6g0291 425 PANTHER OS01G0750732 PROTEIN 9 420 - -
Apr6g0291 425 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0291 Apr-Chr6 3022513 3031756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0291 103 372 Receptor kinase-like Gene Family AT3G19300 42.652 8.62e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Apr6g0291 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0291 - - gmx:100819995 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0291 6 3022513 3031756 Apr6g0291 6 3022513 3031756 ECH
Apr4g2575 4 34545975 34550045 Apr6g0291 6 3022513 3031756 PCT