Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0286 ATGGGAAGAGGGAGGGTTCAGCTTAAACAGATCGAGAACAAAATCAGTCGCCAAGTCACGTTTTCCAAACGGAGAATGGGGCTTCGCAAAAAAGCTCATGAAATCTCTGTGCTTTGTGATGCTCAGGTAGCATTGATTGTGTTCAATGCCAAAGGGAGACTTTTTGAGTATTCATCTGAATCCAGAGCACCCCACCTTCAAAGTTGGGAGAATGCTCTCTCTGCAAAGAGCATGGAAAATGTCCTGGAACGATATGAGAGACATGCCCATTCAGTGCAACTTGTTGGAGCTGGTGATGAATCGCAGGGAAACTGGTCCTTACAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAAGAACTTGAGGAACTTTGTGGGACAAGATCTGGATCACTTGAGCATGAGAGAGCTTCAGAGTTTGGAGCATCAGCTTGACACAGCTCTGAAGCGCATCCGTACTAGAAAGAATCAAATTATGAATGAATCCATCTCAGAGCTACAGAAAAAGGCAAAGGAATTGAAAGAGCATAACAGCATACTTGAAAAGAAGATTAAGGAGCAAGAGAAGACGATGGCTGAACCAACACACTGTGGGCCAGAAATCTTAGGCCAAACATGCCTCCCAGTGCTACAACCACAAAAAAGACTAATTCCTTCCTTAACACTCGGTGAGAATTTACAAGCAGCAACGATTGAGGAAGTGGTTGAAGCTCGAACTGTTCCTAGTACTTCTACTCTCATTCCACCATGGATGCTGCATCATTTTACTAGATGA 780 0.441 MGRGRVQLKQIENKISRQVTFSKRRMGLRKKAHEISVLCDAQVALIVFNAKGRLFEYSSESRAPHLQSWENALSAKSMENVLERYERHAHSVQLVGAGDESQGNWSLQCFKLTGKVEVLEKNLRNFVGQDLDHLSMRELQSLEHQLDTALKRIRTRKNQIMNESISELQKKAKELKEHNSILEKKIKEQEKTMAEPTHCGPEILGQTCLPVLQPQKRLIPSLTLGENLQAATIEEVVEARTVPSTSTLIPPWMLHHFTR* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0286 259 Coils Coil 139 192 - -
Apr6g0286 259 PANTHER MADS BOX PROTEIN 1 234 - -
Apr6g0286 259 CDD MADS_MEF2_like 2 91 IPR033896 GO:0000977|GO:0045944
Apr6g0286 259 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Apr6g0286 259 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr6g0286 259 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Apr6g0286 259 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr6g0286 259 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr6g0286 259 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr6g0286 259 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr6g0286 259 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 234 - -
Apr6g0286 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Apr6g0286 259 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr6g0286 259 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr6g0286 259 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0286 Apr-Chr6 2956873 2966322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0286 1 224 MADS-box Gene Family AT1G26310 52.193 1.21e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr6g0286 K-box 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0286 K09264 - gmx:100787971 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0286 6 2956873 2966322 Apr1g1013 1 16611095 16619346 ECH
Apr6g0286 6 2956873 2966322 Apr9g2935 9 36193783 36199560 ECH
Apr6g0286 6 2956873 2966322 Apr6g0286 6 2956873 2966322 ECH
Apr4g2561 4 34432099 34443163 Apr6g0286 6 2956873 2966322 ECH
Apr7g1378 7 20866457 20872030 Apr6g0286 6 2956873 2966322 ECH
Apr4g2561 4 34432099 34443163 Apr6g0286 6 2956873 2966322 PCT