Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0277 ATGAGGCTTGTCATCTCAGCTCTTTGTGTTCTTGCTTTATTCTCTTATGCAGTAGTTGCTTATGATCCTTTGGATCCAAATGGAAACATAACAATCAAATGGGATGTCGTGTCTTGGACCGCAGATGGCTATGTGGCTGTGGTAACTCTCAACAATTTTCAAATGTTTCGGCACATCATGAATCCTGGGTGGACCTTGGGATGGACATGGGCTAAGAAAGAAGTTATATGGTCCATGGTAGGAGCTCAAGCCACAGAACAAGGAGATTGCTCTAAGTTCAAAGGCAACATACCTCATTGCTGCAAGAAAATTCCCACAGTTGTGGACTTGCTCCCTGGTGTACCTTACAACCAACAATTCACAAACTGCTGTAAGGGTGGAGTGGTGGCAGCATGGGGCCAAGATCCTTCACAAGCTATCTCATCCTTCCAACTCAGTGTAGGACAAGCTGGTACGTCAAACAAGACAGTTAGACTACCCAAGAATTTCACTCTCTTGGCTCCAGGACCTGGCTATACTTGTGGCCCTGCAAAGATTGTTCCTTCCACCACTTTCCTTACACCGGATAAGCGCCGCAAGACTCAAGCACTGATGACTTGGAATGTTACCTGCACATACTCTCAATTTCTAGCTAGAAAGAACCCAAGTTGTTGTGTATCCTTGTCATCCTTCTATAATGAAACCATTACCCCTTGTCCATCTTGTGCCTGTGGCTGCCATAACAAGAAGAATTGTGTGAAGAGAGACTCCAAAATTCTTAGCATGTTGGGGGTTCACACTCCAAAGAAAGACAATGAACCATTGCTGCAATGCACTCATCATATGTGTCCAATCAGGGTTCACTGGCATGTGAAGCAAAACTATAAGGACTATTGGCGAGTCAAGGTTGCCATAACAAACTTCAATTACAGAATGAATTACTCTCTCTGGACTCTTGCTATTCAGCATCCAAATCTTAACAATCTCACCCAAGTTTTCAGCTTTGATTACAAGCCTCTTCTACCCTATGAGTCCATAAATGACACTGGCATGTTCTATGGCATGAAATATTTTAATGATCTACTAATGGAAGCTGGACCAACTGGGAATGTTCAGTCAGAGTTGCTTCTCCAAAAGGACAAGGATAGATTCACTTTCAAGCAAGGATGGGCTTTTCCTCGCAAGGTCTACTTTAATGGTGATGAATGCATGCTGCCACCACCTGACACCTACCCTTTTCTCCCTAACACTGCACCAGCAAATCTATTTATCTTCCAAGCATTCATTTTCTTATTGTTGCCTTTCTTGCTAGTAATTTGGTAA 1302 0.4316 MRLVISALCVLALFSYAVVAYDPLDPNGNITIKWDVVSWTADGYVAVVTLNNFQMFRHIMNPGWTLGWTWAKKEVIWSMVGAQATEQGDCSKFKGNIPHCCKKIPTVVDLLPGVPYNQQFTNCCKGGVVAAWGQDPSQAISSFQLSVGQAGTSNKTVRLPKNFTLLAPGPGYTCGPAKIVPSTTFLTPDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCHNKKNCVKRDSKILSMLGVHTPKKDNEPLLQCTHHMCPIRVHWHVKQNYKDYWRVKVAITNFNYRMNYSLWTLAIQHPNLNNLTQVFSFDYKPLLPYESINDTGMFYGMKYFNDLLMEAGPTGNVQSELLLQKDKDRFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNTAPANLFIFQAFIFLLLPFLLVIW* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0277 433 PANTHER COBRA-LIKE PROTEIN 4 430 - -
Apr6g0277 433 PANTHER PROTEIN COBRA 4 430 IPR006918 GO:0010215|GO:0031225
Apr6g0277 433 PIRSF COBRA 1 433 IPR006918 GO:0010215|GO:0031225
Apr6g0277 433 Pfam COBRA-like protein 44 207 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0277 Apr-Chr6 2835781 2838396 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0277 20 432 COBRA Gene Family AT3G29810 68.750 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0277 - - gmx:100798678 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0277 6 2835781 2838396 Apr6g0277 6 2835781 2838396 ECH
Apr4g2552 4 34325135 34327758 Apr6g0277 6 2835781 2838396 ECH
Apr6g0277 6 2835781 2838396 Apr4g2551 4 34321097 34324786 PCT
Apr4g2552 4 34325135 34327758 Apr6g0277 6 2835781 2838396 PCT