Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0276 ATGCTTTTCTGTTTTTTCTTCACACCCATGATCCGGTTTTTCCCCAAAGCATTTCCATGCATTCTCCTTTTGTTTCTGTTCTCTTCGATGTCCTTCACTTTAACAGAAGCTTATGATCCACTTGATCCAAATGGAAATATCACAATCAAATGGGATATTATAAGCTGGACACCTGATGGTTATGTTGCTGTTGTTACAATGAACAACTTCCAACAATATCGTCATATCTCGGCGCCTGGGTGGTCACTAGGATGGACATGGGCAAAGAAGGAGGTAATATGGAGCATGGTGGGAGGCCAAACCACTGAACAAGGGGACTGTTCAAAATTTAAGGGAACCATCCCACATTGCTGTAAAAAGAACCCAACAGTTGTGGATTTACTCCCCGGAACGCCTTACAATCAACAGATTGCTAACTGCTGCAAAGGTGGTGTACTCAGCTCATGGGCACAGGATCAACCCAACGCAGTTGCATCATTTCAAGTCAGTGTGGGTAGAGGTGGTACCACTAACAAAACTGTTAAATTGCCAAAAAATTTCACCTTGAAAGCACCAGGACCCGGTTATACATGTGGGCCAGCAAAAATTGTGAAACCAACACAATTCATACAAGCAGACAAAAGGAGAGTGACTCAAGCACTCATGACATGGAATGTGACATGCACATATTCACAATTTCTAGCTCAGAAAACACCCACTTGCTGTGTCTCCCTCTCATCTTTCTATAATGATACTATTGTACCCTGTCCAACATGTGCATGTGGCTGCCAGGGCAACTCATCTCAATCAGGGAACTGTGTAGATCCAGATTCATCACATTTGGAATCAGTTGTCTCCAACCATGAACCTGGAAAGAGTAATATTGCACCTTTGGTTCGATGTACTAGTCATATGTGCCCAATCCGAGTTCACTGGCACGTTAAGCTTAACTACAAGGAGTATTGGCGTGTGAAGGTCACTATTACTAATTTCAATTACAGGATGAACTATTCTGATTGGAACTTGGTTGTTCAACATCCAAACTTTGACAATCTGACCCAACTTTTCAGTTTCAACTACCAGGCAATAACGCCCTATGGGTCAATAAATGATACAGCCATGCTTTGGGGAATTAAGTTCTACAATGATCTTCTCATGCAAGCTGGCCCTGTTGGAAATGTGCAGTCAGAGCTACTTTTCAGAAAAGATAAATCAACTTTTACTTTTGACAAGGGATGGGCATTCCCTCGGAGGATCTATTTCAATGGTGACATCTGTGTGATGCCACCACCTGATGCTTATCCATGGTTACCTAACACTGGTTCTCGGCAAGAGGTTTCTCTGCTAGCTTTGATGATGACTTCTTTGGTGGCCTTGGTATTTTATGCAAATGCTTAA 1377 0.4248 MLFCFFFTPMIRFFPKAFPCILLLFLFSSMSFTLTEAYDPLDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHISAPGWSLGWTWAKKEVIWSMVGGQTTEQGDCSKFKGTIPHCCKKNPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDQPNAVASFQVSVGRGGTTNKTVKLPKNFTLKAPGPGYTCGPAKIVKPTQFIQADKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCACGCQGNSSQSGNCVDPDSSHLESVVSNHEPGKSNIAPLVRCTSHMCPIRVHWHVKLNYKEYWRVKVTITNFNYRMNYSDWNLVVQHPNFDNLTQLFSFNYQAITPYGSINDTAMLWGIKFYNDLLMQAGPVGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDICVMPPPDAYPWLPNTGSRQEVSLLALMMTSLVALVFYANA* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0276 458 PIRSF COBRA 10 458 IPR006918 GO:0010215|GO:0031225
Apr6g0276 458 PANTHER COBRA-LIKE PROTEIN 13 457 - -
Apr6g0276 458 PANTHER PROTEIN COBRA 13 457 IPR006918 GO:0010215|GO:0031225
Apr6g0276 458 Pfam COBRA-like protein 61 224 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0276 Apr-Chr6 2831618 2835483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0276 21 457 COBRA Gene Family AT3G02210 76.256 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0276 - - gmx:100804568 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0276 6 2831618 2835483 Apr6g0276 6 2831618 2835483 ECH
Apr4g2551 4 34321097 34324786 Apr6g0276 6 2831618 2835483 ECH
Apr4g2551 4 34321097 34324786 Apr6g0276 6 2831618 2835483 PCT