Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0249 ATGGCGACAGCGAGAACCGTCAAGGATGTTTCGCCTCACGATTTCGTGAAGGCTTACGCTTCTCACCTTAAGCGTTCTGGCAAGATGGAGCTTCCTGAGTGGACAGATATTGTAAAAACTGCAAAATTTAAGGAACTGGCTCCTTATGATCCTGACTGGTATTATGTTAGAGCGGCCTCCATGGCAAGAAAGATCTATTTGAGAGGTGGTCTCGGTGTTGGTGCTTTTAGAAGGATCTATGGTGGAAGCAAGAGAAATGGAAGCCGCCCCCCGCACTTCTGCAAGAGCAGCGGAGCTGTTGCCAGACACATTCTGCAACAGTTACAAAACATGAATATTGTTGAGCTTGATACAAAAGGAGGTAGGAGAATCACATCTAGTGGTCGAAGGGATCTTGACCAAGTTGCTGGGCGAATTGTGGTTGCTACTTGA 432 0.4699 MATARTVKDVSPHDFVKAYASHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGAVARHILQQLQNMNIVELDTKGGRRITSSGRRDLDQVAGRIVVAT* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0249 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Apr6g0249 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Apr6g0249 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Apr6g0249 143 PANTHER 40S RIBOSOMAL PROTEIN S19-1-RELATED 3 141 - -
Apr6g0249 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Apr6g0249 143 Gene3D - 1 142 IPR036388 -
Apr6g0249 143 PANTHER 40S RIBOSOMAL PROTEIN S19 3 141 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0249 Apr-Chr6 2583132 2585092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0249 1 141 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 90.071 2.17e-96 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0249 K02966 - gmx:100805469 283.493