Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0238 ATGGCAGAATCATCAACCACCGACACCGCTGCCGCGCCTCCGCCGCCGGCGACCAAGAGCTGGGCCGACGAAGCCGACGAGGAAACCAACGCCTCCACAACAGAGCCCGAAACCTCTTCCGTCAACGTCGACGAATTAACCATCGAAGATAACAAGAAACCGCCGAAATTGTTGGATGACCCCGACGACTCCAACATCCAAGCGGTGACCTCAGGCGACACTCCGTACACGTCGGCGGCGGCGTTCGAAGATCTAAACCTCTCCCCGGAGCTGCTGAAGGGACTCTACGTTGAGATGAAGTTCCAGAAACCGAGTAAAATCCAAGCGATTAGTTTACCAATGATTTTGAGTCCTCCGCATAGGGATTTGATTGCGCAAGCGCACAACGGTTCTGGCAAGACGACTTGTTTTGTGCTTGGGATGCTTAGTCGCGTGGATCCGAAAATGCAGGCTCCTCAGGCTCTCTGCATTTGCCCCACCAGAGAGTTGGCTATTCAGAACACTGAGGTTCTGCGCAAGATGGGGAAGTACACGGGGATTAGCTCCGAATGTGCCGTGCCAATGGATAGCCGCGATGCCCTTCCGATAGCAAAACGCGCGCCAATTATGGCTCAGGTGGTGATTGGGACCCCTGGCACCATTAAGAAGTGGATGAGCTTTAAGAAACTTGGGGCCACGAGGTTGAAGATTCTTGTGTTTGATGAAGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGAAATAGAAAAAGTCAATTCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTTAACGAAACTGTCAAGAATTTTGTTTCAAGAACAGTTAAGAAGGATCATAATAAACTCTTTGTAAAGAAAGAAGAACTGTCTCTAGATGCCGTGAAGCAATATAAAGTGCGGTGTCCTGATGAACTCTCTAAGGTTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTAGGGCAAACCATTATATTTGTGCGCACAAGAAACAGTGCAAAAATGTTACATAAATCCCTTGTGGATTTGGGCTATGAAGTTACTTCTATACAAGGTGCTCTTGAGCATGAGGAGAGAGACAAGATTGTCAAAGAGTTCAGAGATGGTTTGACCCAGGTTCTTATATCAACTGATGTTCTCGCTCGTGGCTTTGATCAGCAACAGGTTAATTTGGTTATCAACTATGATCTTCCAGTGAAACACACTGCTGAGTATACCCGTGAACCTGACCCTGATTATGAAGTATATTTGCACAGGGTTGGTAGGGCTGGGCGTTTTGGGCGCAAGGGGGCTGTATTTAACCTAATATGTGATGAAAGGGATGAAAGGCTCATGTCGAAGATTGAGAACCATTTTGGCACTCGTGTAACTGAGGTGCGAGAAAAAAGTGTTGAAGACTATAAAGCTGCTCTCAAAGAAGCTGGTTTACTTCAATGA 1470 0.4626 MAESSTTDTAAAPPPPATKSWADEADEETNASTTEPETSSVNVDELTIEDNKKPPKLLDDPDDSNIQAVTSGDTPYTSAAAFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKMQAPQALCICPTRELAIQNTEVLRKMGKYTGISSECAVPMDSRDALPIAKRAPIMAQVVIGTPGTIKKWMSFKKLGATRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKVNSNCQVLLFSATFNETVKNFVSRTVKKDHNKLFVKKEELSLDAVKQYKVRCPDELSKVEVIKDYIFEIGENVGQTIIFVRTRNSAKMLHKSLVDLGYEVTSIQGALEHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYTREPDPDYEVYLHRVGRAGRFGRKGAVFNLICDERDERLMSKIENHFGTRVTEVREKSVEDYKAALKEAGLLQ* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0238 489 MobiDBLite consensus disorder prediction 1 72 - -
Apr6g0238 489 Gene3D - 297 486 IPR027417 -
Apr6g0238 489 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 109 IPR014014 GO:0003724
Apr6g0238 489 SMART ultradead3 100 306 IPR014001 -
Apr6g0238 489 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 59 468 - -
Apr6g0238 489 Pfam DEAD/DEAH box helicase 106 278 IPR011545 GO:0003676|GO:0005524
Apr6g0238 489 PANTHER DEAD-BOX HELICASE DBP80 59 468 - -
Apr6g0238 489 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 319 479 IPR001650 -
Apr6g0238 489 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 290 IPR014001 -
Apr6g0238 489 Pfam Helicase conserved C-terminal domain 317 438 IPR001650 -
Apr6g0238 489 Gene3D - 59 296 IPR027417 -
Apr6g0238 489 SMART helicmild6 345 438 IPR001650 -
Apr6g0238 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 456 IPR027417 -
Apr6g0238 489 CDD SF2_C_DEAD 303 447 - -
Apr6g0238 489 MobiDBLite consensus disorder prediction 46 60 - -
Apr6g0238 489 CDD DEADc_DDX19_DDX25 87 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0238 Apr-Chr6 2489585 2494009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0238 81 470 Eukaryotic Initiation Factors Gene Family AT1G72730 36.962 1.72e-71 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0238 K18655 - gmx:100778091 794.267