LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr6g0233	ATGGCGGCGGCGAAACCCCAACGGACTCCAGAGGAAGTGGAGGACATCATCATCCGCAAAATCTTCCTCGTTTCTATCACCGAAAGCAGCAATAGCAACAACGATTCAAGAATCGTGTACATGGAAGTAACGGCTGCTGAGATTCTCAGCGAGGGCAAAGAGTTGCGGCTCTCGCACGATTCCATGGAGAGGGTTTTAATCGATCGACTTTCCGGGGATTTCTCCTCCGCCGGTGCCGGAGACGAATCACCGTTTCAGTACCTCGTCGGTTGTTACCAGCGTGCCCACGATGAGGGAAAGAAAATCGCTAACATGAAGGACAAGAACTTGAGGTCGGAGATGGAAGCGGTGGTGAAGCAGGCGAAGAAACTCTGTGTTTCTTACTGCAGGATTCATTTGGAGAATCCTGAATTGTTTCCGAGCCGGAATTCGGGCTCCGGAGCTAGTTCTTCGCCGCTTTTGCCGCTGATTTTCGCGGAGGTCGGTGGCGGCATGTTTGGCAGCGGCGGCGGAGTGAAGAGTCCGCCGGGGTTTCTGGAAGAGTTTTTTAGGGACCCTGATTTTGATAGCTTGGACCGAATTCTGAAAGGGTTGTATGAGGAATTGAGAGGGAGTGTGATGAAAGTGTCTGCTCTTGGGAATTTTCAGGACTCTTTGAGGGCTTTGCTGTATTTGGTTAGGTTTCCCGTCGGTGCGAAGTCCCTTGTGAATCATGATTGGTGGATTCCCAAGGGTGTTTATGTGAATGGCCGTGCCATTGAAATGACCAGCATTTTGGGTCCCTTTTTCCATATCAGTGCTCTTCCTGATCAAAACTTTTTCAAGGGCCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGACCATCTGATTTGTTGTCTTCATTTTCTACCATCAAAACTGTCATGAACAACTTATATGATGGCCTAGCTGAAGTACTACTCATCCTCCTTAAAAGTACAGATACTCGTGAAAACGTACTTAAGTATCTTGCAGAGGTGATCAATATAAACGCATCCAGGGCCCATATACAGGTTGACCCTATTGCTTGTGCAAGTTCTGGCACATTTGTGAATCTCAGTGCTGTCATGCTTCATCTATGTGAGCCATTTTTAGATGCAAATTTAACGAAAAGGGATAAAATTGATCCAAAATATGTACACTACTCAAAGCGTTTGAATCTAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTGGCTGAATGGCTTAATAGTAAAAATCCAGCTAATACTGGGGGAACCAGTCAATATAATGATGACCAGAAACGCTTGCAACAATCCCAAGAGGCCAGTAGTTCTGGTAGTAATAATGCTGGTGAGCTTTCAAATGAAAATTCTGCACGTGGTGAAAAGACGAAATATTCATTTATTTGCGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGACATTTCTCGGTGTGAAGATGCTTTCTCCACACTTAAAGCCATGCAGGAGCAGTCACCCTCTCCTCAGGTGGAATTGGATATAAATCGACTTGAGAAAGAAATGGAGTTGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAGATATTGAGGGATAACACACTTATTCAGAATGCACTTTCCTTCTACCGCTTGATGATTGTTTGGTTGGTTGGCTTAGTGGGTGGATTTAAGATGCCTCTACCCCCAACTTGCCCAATGGAATTTGCTACCATGCCTGAGCATTTTGTGGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTTGTGCTGGATGAGTTTATGAACTTTATTATCATGTTCATGGCCAGTCCTAACTTTATCAAGAACCCATACTTGAGAGCAAAGATGGTTGAAGTCTTGAACTGCTGGATGCCTCGTAGGAGTGGCTCATCTGCTACAGCTACTCTATTTGAAGGGCATCAACTCTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTTGACATTGAGTTCACTGGTTCTCATACACAGTTCTATGACAAGTTTAACATCCGCCATAATATTGCCGAACTCCTTGAATACCTGTGGCAGGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACAGCTGAGTGGGAGCAACGACCAGTTCAAGAGAGGCAGGAGAGGACCCGATTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGTTCCATTTCTACTTCCTGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTTCTCCTTCAATTGGTGGGTCCCCAAAGAAAATCCCTTAGTTTGAAGGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTGCTAAAACAGATTGTGCACATATATGTTCATCTGGCTAGGGGTGACAAGAATTCCATCTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAGTTGTTTAGTGCTGCGGCAGAAGTCCTACATAGAATTGGCGAGGATGGGAGGATTATACAGGAATTTATTCAACTTGGCTCAAAAGCAAAAGTTGCTGCTTCAGAGGCCATGGATACTGAAGCTACTCTAGGGGAAATCCCAGATGAATTCCTCGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCCGTCATTCAAAGGCATCTTCTTAGTGATAATTCTGACCCATTCAACCGTTCTTATCTCACTGTGGATATGCTGATTCCCAATGATGAGCTAAAAGCAAGAATTGAGGAGTTTGTCAGGTCTCAGGAAATGAAGAAACACGGCGAAGGACTAAGGCTACAGAATACCAAAGCAACCATTCAGACTACGAATGGAGAAATGTTGATTGATTAG	3117	0.435	MAAAKPQRTPEEVEDIIIRKIFLVSITESSNSNNDSRIVYMEVTAAEILSEGKELRLSHDSMERVLIDRLSGDFSSAGAGDESPFQYLVGCYQRAHDEGKKIANMKDKNLRSEMEAVVKQAKKLCVSYCRIHLENPELFPSRNSGSGASSSPLLPLIFAEVGGGMFGSGGGVKSPPGFLEEFFRDPDFDSLDRILKGLYEELRGSVMKVSALGNFQDSLRALLYLVRFPVGAKSLVNHDWWIPKGVYVNGRAIEMTSILGPFFHISALPDQNFFKGQPDVGQQCFSDASTRRPSDLLSSFSTIKTVMNNLYDGLAEVLLILLKSTDTRENVLKYLAEVININASRAHIQVDPIACASSGTFVNLSAVMLHLCEPFLDANLTKRDKIDPKYVHYSKRLNLSGLTALHASSEEVAEWLNSKNPANTGGTSQYNDDQKRLQQSQEASSSGSNNAGELSNENSARGEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDAFSTLKAMQEQSPSPQVELDINRLEKEMELYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPPTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPNFIKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWEQRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITVPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDKNSIFPAAISKDGRSYNDQLFSAAAEVLHRIGEDGRIIQEFIQLGSKAKVAASEAMDTEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDNSDPFNRSYLTVDMLIPNDELKARIEEFVRSQEMKKHGEGLRLQNTKATIQTTNGEMLID*	1039

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr6g0233	1038	ProSiteProfiles	U-box domain profile.	939	1013	IPR003613	GO:0004842\|GO:0016567
	Apr6g0233	1038	SUPERFAMILY	RING/U-box	932	1012	-	-
	Apr6g0233	1038	PANTHER	-	1	1015	-	-
	Apr6g0233	1038	SMART	Ubox_2	943	1006	IPR003613	GO:0004842\|GO:0016567
	Apr6g0233	1038	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	939	1017	IPR013083	-
	Apr6g0233	1038	Coils	Coil	518	545	-	-
	Apr6g0233	1038	Pfam	Ubiquitin elongating factor core	259	923	IPR019474	GO:0000151\|GO:0006511\|GO:0016567\|GO:0034450
	Apr6g0233	1038	Pfam	U-box domain	940	1011	IPR003613	GO:0004842\|GO:0016567
	Apr6g0233	1038	MobiDBLite	consensus disorder prediction	418	459	-	-
	Apr6g0233	1038	PANTHER	UBIQUITINATION FACTOR E4	1	1015	IPR045132	GO:0000151\|GO:0030433\|GO:0034450
	Apr6g0233	1038	CDD	RING-Ubox_UBE4A	942	1010	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr6g0233	1	1038	U-box Gene Family	AT5G15400	76.023	0.0	1626

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr6g0233	K10597		-	gmx:100806175	1865.12

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr6g0233	6	2431996	2443543	Apr6g0233	6	2431996	2443543	ECH