Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0225 ATGACCAATTTTCTCTCCGACGAGTGCTCCTCCTTCTCTCAGCTTCTTGCTGATGGTGATGGTGATGGGTTCCACAAACTCAACCAGAGAAGACTCATTGATTTGGTGGTTGCTTCTTCCCCACACCCTTCCTCCTTCCTCAGCTCGCCCCAGAGTCCCTTCGGAATATCCCACCAACAGGCTTTATTAGCACATGTAACAGTGCAAGCTGTCATAGCACAATTAAATATGCAAATGCCAGCCAATTATCATAAGCCCACAATAGTAACAACTTCCAATGATGAACCATTGACACAACATTCATCTTTTACTCTGAATGATGCCAATTCAAAGCAGAAAGTGGCACCATCAGAGAATATATCTCATGCTAATAAGAAATATCAAATGCTTTCTTCCCTAGCTACTGATAAACCTTCAAATGATGGCTACAATTGGCGAAAGTACGGGCAAAAACAAGTTAAGGGTAGTGAATTTCCAAGGAGCTACTACAAATGCACACATGTGAATTGTTATGTGAAGAAAAAGGTTGAGCGTGCCTCTGATGGTCACATCATTGAAATCATCTATAAAGGGCAACATAACCATGCAAAGCCTCATGCACATAGGCGCGTAAAAGTTAACTCAAATGAAAATACATGCATCCATCATGCCAAGTCTGAGTCAAAGTTAAACACACATCAAGCTTTTTGGGTTGGAAATTCAAACAAGTTAGGTGGTGAAGAGTTGGGTGATTGTTTTGTTCTTGAGAGTGATCAGAATCAGGACTTCAATCAAAGGGCTCCTAGTGACAATGAGGACATGGGTGATGTAGACATTAGGGAAGAAGGAGATTACAGTGAACCAAATCCTAAGAGAAGGAACACTGATATTGGGGTTTCTAAAGCTCCTGTGCCTCACAAGACTATCACAGAACCCAAAATCATTGTGCAAACAAGAAGTGAAGTTGATATTTTGGATGATGGGTACAGGTGGCGCAAGTATGGGCAGAAAATGGTAAAGGGTAATCCTCATCCAAGGAGTTATTACAAATGCACAAGTGCAGGATGCAATGTGCGAAAGCATGTTGAGAGAGCTTCAATGGATCCCAAAGCGGTGATAACTACCTATGAAGGAAAGCATAATCATGATGTGCCTGCTGCTAGAAACGTACAGCAGCCACAATATTAA 1167 0.4173 MTNFLSDECSSFSQLLADGDGDGFHKLNQRRLIDLVVASSPHPSSFLSSPQSPFGISHQQALLAHVTVQAVIAQLNMQMPANYHKPTIVTTSNDEPLTQHSSFTLNDANSKQKVAPSENISHANKKYQMLSSLATDKPSNDGYNWRKYGQKQVKGSEFPRSYYKCTHVNCYVKKKVERASDGHIIEIIYKGQHNHAKPHAHRRVKVNSNENTCIHHAKSESKLNTHQAFWVGNSNKLGGEELGDCFVLESDQNQDFNQRAPSDNEDMGDVDIREEGDYSEPNPKRRNTDIGVSKAPVPHKTITEPKIIVQTRSEVDILDDGYRWRKYGQKMVKGNPHPRSYYKCTSAGCNVRKHVERASMDPKAVITTYEGKHNHDVPAARNVQQPQY* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0225 388 SUPERFAMILY WRKY DNA-binding domain 310 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr6g0225 388 PANTHER WRKY PROTEIN 45 383 - -
Apr6g0225 388 SMART WRKY_cls 318 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr6g0225 388 SMART WRKY_cls 139 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr6g0225 388 MobiDBLite consensus disorder prediction 253 296 - -
Apr6g0225 388 Gene3D WRKY domain 303 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr6g0225 388 Gene3D WRKY domain 124 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr6g0225 388 SUPERFAMILY WRKY DNA-binding domain 135 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr6g0225 388 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 45 383 IPR044810 GO:0003700
Apr6g0225 388 Pfam WRKY DNA -binding domain 140 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr6g0225 388 Pfam WRKY DNA -binding domain 319 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr6g0225 388 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr6g0225 388 MobiDBLite consensus disorder prediction 92 116 - -
Apr6g0225 388 ProSiteProfiles WRKY domain profile. 134 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0225 Apr-Chr6 2369843 2373114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0225 56 378 WRKY Transcription Factor Family AT1G13960 50.301 1.37e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr6g0225 WRKY 7.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0225 - - aprc:113867597 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0225 6 2369843 2373114 Apr6g0225 6 2369843 2373114 ECH