Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0224 ATGGGTTGCATTAACTCGAAGAATGTGGTTACCAGAGCTCGTTCTCCGTCGCCGGTGAAAGGTGACCTTGCCGTTTCTCTTACTGCTTCCTCCAAGGGGTTTGTGGGTTCTGAACATAGAACAGGGACAGGGGATGATAGGAACATTAAGTTGAAGAAGAATGGTTCTAAAAAGAGTAATGGGTCTTTAAGCTTCAGAATTGGGGTGCCCCATAGGTATCTGGAGGCTGAACAGAATGCTGCTGGTTGGCCTCCTTGGCTCACTGCTGCTGCTGCTGAAGCCGTTCAAGGATGGGTCCCACTCAAAGCTGATTCTTTTCAGAAGTTAGAAAAGATTGGACAAGGTACATACAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACAGGGAAGATATTTGCATTGAAGAAGGTGCGTTTTGACAATTTCCAACCTGAGAGCATCAGGTTCATGGCAAGAGAAATAACAATCTTACGTAGGCTTGATCATCCAAACATCATGAAATTGGAAGGGATAATCACTTCTCGCCTCTCAAATAGCATATATCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTGTCACGTCCTGATATTGTGTTCTCTGAATCACAGATAAAATGTTACATGAGGCAGCTATTAAGTGGACTTGAGCATTGTCATGTCCGTGGCATTATGCATCGTGACATCAAAGTATCAAATATCTTACTGAACAATGAAGGTATTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGCACAAATAACAAGCATCCTTTGACAAGTCGTGTTGTGACTCTGTGGTATCGTCCTCCTGAGCTCTTGATGGGATCAACCAACTATGGAGTATCAGTGGATCTGTGGAGTGTAGGGTGTGTATTTGCAGAGCTTTTTCTTGGGAAGCCTGTCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTTAAGCTGTGTGGTTCTCCACCTGATGAGTTCTGGAAAAAGAGTAAACTTCCTCATGCAACAATGTTTAAGCCTCAAGCTAATTATGAAAGCTCTCTTCGAGAGAAGTGTATAGATTTTCCTGCTACTGCTGTAAATCTACTTGAAACTATACTGTCCATTGACCCAAACAACCGAGGGACGGCCTCCTCTGCTCTAATGTCCGAGTATTTCAGCTCCAAGCCATATGCTTGTAATCCATCAACCCTGCCAAAGTATCCTCCTAGCAAAGAAATGGATGTCAAAAATATGGAAGATTCAGCCAGGAAAAAGACTGGAGGTAAAATGAGAGAGGCTGCAACATCAAGAAGGCAACAAAGAAGAGTAAGTAAAGTTTTGCAAGAGCCAAACAATTTCGGCAAATATACTTCAAAAGAGAACATTTCTCAAAATGTTAGTAGAGATGATGTTAAAGCACATCTTACAAAGGGCAAAGGAGGAGCTATTCACAAAGAGCAAACAAAGCCTTCATTGGATGCTATGTCAGAGGTTTCCCAATTGGTGACTGTTGCTGATGGTAATGGCTATAGTGTACCAATACAAGTCATCCCAGGATCTAATGATGCCTTTACATGGACCAAAAGGAGAAAACAAGATGCATCATCCACACTATCAGATGGATCAAAAAGCAAAATTAGTGCACTGGATCCAAACTTTGCAAGAGGCACATATGACTTAACCAAACAAAGGGTAACCATGGACTTTGATCCTGCAGAACTGATAATTACTCAGGGCAAAAGAGAAGAACAAGGTGCATATTGGAATGAAAATGGCATGCGGCGTGCTGTTCGTAAATCAAGATTTGGAAGAGGTAAATGA 1815 0.4187 MGCINSKNVVTRARSPSPVKGDLAVSLTASSKGFVGSEHRTGTGDDRNIKLKKNGSKKSNGSLSFRIGVPHRYLEAEQNAAGWPPWLTAAAAEAVQGWVPLKADSFQKLEKIGQGTYSSVFRAREVETGKIFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPDIVFSESQIKCYMRQLLSGLEHCHVRGIMHRDIKVSNILLNNEGILKIGDFGLANTISTNNKHPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPVLKGRTEVEQLHKIFKLCGSPPDEFWKKSKLPHATMFKPQANYESSLREKCIDFPATAVNLLETILSIDPNNRGTASSALMSEYFSSKPYACNPSTLPKYPPSKEMDVKNMEDSARKKTGGKMREAATSRRQQRRVSKVLQEPNNFGKYTSKENISQNVSRDDVKAHLTKGKGGAIHKEQTKPSLDAMSEVSQLVTVADGNGYSVPIQVIPGSNDAFTWTKRRKQDASSTLSDGSKSKISALDPNFARGTYDLTKQRVTMDFDPAELIITQGKREEQGAYWNENGMRRAVRKSRFGRGK* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0224 604 Gene3D Transferase(Phosphotransferase) domain 1 189 430 - -
Apr6g0224 604 MobiDBLite consensus disorder prediction 39 53 - -
Apr6g0224 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Apr6g0224 604 SUPERFAMILY Protein kinase-like (PK-like) 101 395 IPR011009 -
Apr6g0224 604 PANTHER CYCLIN-DEPENDENT KINASE 6 598 - -
Apr6g0224 604 Pfam Protein kinase domain 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0224 604 MobiDBLite consensus disorder prediction 410 442 - -
Apr6g0224 604 ProSiteProfiles Protein kinase domain profile. 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0224 604 PANTHER CELL DIVISION PROTEIN KINASE 6 598 - -
Apr6g0224 604 Gene3D Phosphorylase Kinase; domain 1 93 188 - -
Apr6g0224 604 CDD STKc_CDK9_like 106 390 - -
Apr6g0224 604 SMART serkin_6 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0224 604 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Apr6g0224 604 MobiDBLite consensus disorder prediction 36 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0224 Apr-Chr6 2362533 2367100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0224 98 430 Core Cell Cycle Gene Families AT5G10270 47.278 3.11e-108 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Apr6g0224 Pkinase 1.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0224 - - gmx:100790917 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0224 6 2362533 2367100 Apr6g0224 6 2362533 2367100 ECH