Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0222 ATGGCAAGGAAGAGAAAGGTTGCTGAAGAAGTGGAAGAGAGAAACCTATGTGAGGGAACCATGGCTTGGGATGAAATGATGAAGCAAGCTGCTGCACTTGGAGGAGCCCAAAGAGCTAGGAAAAGATTTGTTGGAGTAAGGCAAAGGCCATCAGGTAGATGGGTAGCTGAGATAAAAGACACCATCCAAAAGATCAGGGTGTGGTTAGGAACTTTTGACACAGCTGAAGAAGCTGCAAGAGCCTATGATGAAGCTGCTTGTTTGCTTAGAGGTGCCAACACTAGGACAAACTTTTGGCCTTGTTCTCAATCTTCCTCAAGTCCTGCTCTTTCTTCAAAGATCACAAATCTACTACTTCAAAGGCTTAAAGAAAGGAACTCTTGTTCCTCTAGCTCCTCCTCTACCCTTGTTAGCAATCACCAACAAATGCAACAAGTAGATGCATGTGGAGCAGGATCAACAAAATTCTCAATTGACCAATTCGCTGATTTCCTCAATGACCCTGAAGATTATAACACAAGCAACAATGACTTCATCAATAACACTGCACAAATTGATTACATTACTAGTAGCTTTGAATCATGTTTAACTGAAAAAGATGACAACAAGGAAACTGAAATGGGTATGGAATGTAAATCCACTAATGTGACACCACAGACTCCAAGTAATGATAGCAATTCAGGAGTGGAAAGAGAGGAAGATAGTGAAGAAGAAGGAACTGATTTTGGTGTCCATGATTTTAGATTTCTTGATACTATTGCTCCACCAAGTTACTATTCTCCTTTTGAGATGGCTGAAGAGATGGAGGAGCCTGTGGAGCCAGAAAACTTTGGTGACGACCCTTCAATGCTTAGAGCTGTCATGAAGCGAATGACATATGAAAGAAAGTTCTCAGCTTCTCTGTATGCCTTCAATGGAATTCCTGAGTGCTTGAAGTTGAAACTTGAATCAGGAAACATGAAGGGCAGAGGGATTGCCGATCAATTAACCAACCTACAAATGGCTTGTAGCAAAAACAAACTTGAGAAGAACAAGGAAGAGAAAGAATACATGGAAACAACGGAAAGGAAAGAGGAAGAACACCACCAACAAACATCACCTGATATGGATTCTTCTTCATCTAGTGTTGATGGGGAACTCTTACTTTGGAATTCCCTAGATCTTCCTCCTATTTGCTTTGTTAACTTATTAGAAAATGGTTCATTCCATTAG 1212 0.4076 MARKRKVAEEVEERNLCEGTMAWDEMMKQAAALGGAQRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSSSPALSSKITNLLLQRLKERNSCSSSSSSTLVSNHQQMQQVDACGAGSTKFSIDQFADFLNDPEDYNTSNNDFINNTAQIDYITSSFESCLTEKDDNKETEMGMECKSTNVTPQTPSNDSNSGVEREEDSEEEGTDFGVHDFRFLDTIAPPSYYSPFEMAEEMEEPVEPENFGDDPSMLRAVMKRMTYERKFSASLYAFNGIPECLKLKLESGNMKGRGIADQLTNLQMACSKNKLEKNKEEKEYMETTERKEEEHHQQTSPDMDSSSSSVDGELLLWNSLDLPPICFVNLLENGSFH* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0222 403 MobiDBLite consensus disorder prediction 203 245 - -
Apr6g0222 403 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Apr6g0222 403 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Apr6g0222 403 Coils Coil 343 363 - -
Apr6g0222 403 MobiDBLite consensus disorder prediction 342 366 - -
Apr6g0222 403 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 332 - -
Apr6g0222 403 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Apr6g0222 403 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Apr6g0222 403 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Apr6g0222 403 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 332 - -
Apr6g0222 403 MobiDBLite consensus disorder prediction 209 226 - -
Apr6g0222 403 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Apr6g0222 403 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Apr6g0222 403 MobiDBLite consensus disorder prediction 342 374 - -
Apr6g0222 403 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0222 Apr-Chr6 2348682 2349893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0222 40 118 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.12e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr6g0222 AP2 7.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0222 K09286 - gmx:100786711 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0222 6 2348682 2349893 Apr6g0222 6 2348682 2349893 ECH