Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0212 ATGGAATCATCCTTACGTGTGAGAAAAGGTGCATGGAGTGATGTTGAAGATGAACTTCTCAGGTCCTGTGTACAAAAACATGGAGAAGGAAAATGGAACTTGGTGCCTAAAAGAGCCGGCTTGAACCGATGCCGCAAAAGCTGTAGATTGCGTTGGTTGAATTATCTAAAACCAACCATCAAGAGGGGAGAGTTCACCGAGGACGAAGTTGATATGATGACAAGATTGCATAGACTTTTGGGAAACAGATGGTCCTTGATTGCTGGAAGACTTCCTGGAAGAACTCCAAACGATGTGAAAAACTACTGGAACACTTACATTAGGAAGAAGGTATCTGCTGATCAAAAGATGAAGGGTGAGGAAACAGTGAAACCTCACATAGTGATAAAGCCTTGGCCTCGAACATTCTCAAGAACTTGTTCACCTTGGTTAAGAGGAAGAGTCCTTCAAAGTGGGGTCTCTGCTAAACCATGTGAGGCTGCTTCAGAGTGTAGTAAATGGAGGACTATGATGGATGACGAAGGAATAAGCAACATAGAAAACGATAAATGCTGTTTGGATGACCAAGATCGAAATATTGGAAAGCTCTTCACAGACATTAATTGTGGTGATGAGGAGCTTACTTCGTTCACCCCGCAAGGGGATGATTTTCCTATCGAAGATCAAAGTTGGAGTGATTTTCTCCTTCAAATTAATTTTTGGGATTCCTGA 711 0.4219 MESSLRVRKGAWSDVEDELLRSCVQKHGEGKWNLVPKRAGLNRCRKSCRLRWLNYLKPTIKRGEFTEDEVDMMTRLHRLLGNRWSLIAGRLPGRTPNDVKNYWNTYIRKKVSADQKMKGEETVKPHIVIKPWPRTFSRTCSPWLRGRVLQSGVSAKPCEAASECSKWRTMMDDEGISNIENDKCCLDDQDRNIGKLFTDINCGDEELTSFTPQGDDFPIEDQSWSDFLLQINFWDS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0212 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Apr6g0212 236 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 122 - -
Apr6g0212 236 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Apr6g0212 236 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Apr6g0212 236 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Apr6g0212 236 CDD SANT 64 107 IPR001005 -
Apr6g0212 236 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Apr6g0212 236 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Apr6g0212 236 CDD SANT 11 56 IPR001005 -
Apr6g0212 236 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 122 - -
Apr6g0212 236 Gene3D - 9 61 - -
Apr6g0212 236 Gene3D - 63 126 - -
Apr6g0212 236 SMART sant 61 109 IPR001005 -
Apr6g0212 236 SMART sant 8 58 IPR001005 -
Apr6g0212 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0212 Apr-Chr6 2277444 2278538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0212 2 137 MYB Transcription Factor Family AT1G66370 59.459 1.33e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr6g0212 Myb_DNA-binding 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0212 - K16166 gmx:100306270 283.108