Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0210 ATGGGACGATCACCATGCTGCGACAAGGTGGGTTTAAAGAAAGGACCATGGACTCCTGAGGAAGATCAAAAGCTCTTAGCTTATATTGAAGAACATGGTCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGACTTCAGAGATGTGGCAAGAGCTGCAGACTAAGATGGACCAATTATCTTAGGCCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAGCAAACCATCATTCAACTCCACGCTCTCTTAGGGAACAGGTGGTCGGCAATAGCCACACACTTACCAAAGAGAACGGATAATGAGATCAAGAACTATTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGGATTGACCCAGTGACACACAAGCCAAAAAATGATGCTCTTCTCTCTAGTGATGGTCAATCCAAAACCGCTGCAAACCTTAGCCACATGGCTCAGTGGGAAAGTGCACGCCTTGAAGCTGAAGCAAGACTAGTAAGAGAATCAAAACTACGTTCACATTCACTTCAACAACAACTTGGAAGTTCTTCTACTACATTTGCATCTTCATCATCAACATTTGCATCCACATCATCTGCATCAACTTCAGCTTCAGTTCTTAATAATAACAACAAACAAGAACCACCACCACCATCATCACATGTTCCTTCACGTTCTTCCCTTGATGTGCTCAAGGCTTGGAATAACGGAGGGTGGTTAAAGTCAAGTGAAGGAAATGGTGGCATTGGAAGCACTGTTGGGATAAGTGGGGACCTTGAATCTCCTACATCTACTCTCTCTTTCTCTGAGAATGCACCACCAACTATGACAAGTGGTGGAATTGGAGGAGAAAATAATAACAATAGTAGTAATAATAATAATAATGCAGTGCCTATGATTGAGTTTGTGGGGAGTTCAGGTAATTCTTCTTCTCTTGTGAAGGAAGAAGGTGAGCAAGAGTGGAAAGGTTATGAAAGTTCAATGAGTACTTTTAGCTCTGGTTTGCACGAGTTAACTATGTCCATGGAAGGCGCATGGGCCTCTGAGTCTCTTAGGGCTAGTGGCTCACATGAAGATGTCATTGTTGAAGAAGGGTTCACCAATCTTTTGCTTAAAACACACTCCGATGACCGGAGTTTGTCGTCGGAGGGTGGTGGAGAGTCTAATAACGGTGATGGTGGTGGCAGTGGCAGCGATTTCTATGAAGATAACAATAACTATTGGAACAGCATTCTTAATTTAGTGAATTCCTCCCCTTCAGATTCCCCAATGTTTTGA 1272 0.4308 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHSLQQQLGSSSTTFASSSSTFASTSSASTSASVLNNNNKQEPPPPSSHVPSRSSLDVLKAWNNGGWLKSSEGNGGIGSTVGISGDLESPTSTLSFSENAPPTMTSGGIGGENNNNSSNNNNNAVPMIEFVGSSGNSSSLVKEEGEQEWKGYESSMSTFSSGLHELTMSMEGAWASESLRASGSHEDVIVEEGFTNLLLKTHSDDRSLSSEGGGESNNGDGGGSGSDFYEDNNNYWNSILNLVNSSPSDSPMF* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0210 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr6g0210 423 CDD SANT 69 112 IPR001005 -
Apr6g0210 423 MobiDBLite consensus disorder prediction 372 399 - -
Apr6g0210 423 CDD SANT 16 61 IPR001005 -
Apr6g0210 423 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr6g0210 423 MobiDBLite consensus disorder prediction 172 213 - -
Apr6g0210 423 MobiDBLite consensus disorder prediction 119 147 - -
Apr6g0210 423 MobiDBLite consensus disorder prediction 172 223 - -
Apr6g0210 423 Gene3D - 69 116 - -
Apr6g0210 423 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 416 - -
Apr6g0210 423 SMART sant 66 114 IPR001005 -
Apr6g0210 423 SMART sant 13 63 IPR001005 -
Apr6g0210 423 PANTHER TRANSCRIPTION FACTOR MYB106 1 416 - -
Apr6g0210 423 MobiDBLite consensus disorder prediction 132 147 - -
Apr6g0210 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr6g0210 423 Gene3D - 13 66 - -
Apr6g0210 423 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr6g0210 423 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr6g0210 423 MobiDBLite consensus disorder prediction 239 294 - -
Apr6g0210 423 MobiDBLite consensus disorder prediction 380 399 - -
Apr6g0210 423 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr6g0210 423 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0210 Apr-Chr6 2235114 2238144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0210 1 423 MYB Transcription Factor Family AT3G01140 54.353 2.90e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr6g0210 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0210 K09422 - gmx:100101835 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0210 6 2235114 2238144 Apr6g0210 6 2235114 2238144 ECH