Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0209 ATGGCCAAGATGGGTGAAAGAGAGTGGTATTTTTTCTGTGTGAGGGACAAAAAATACCCAACTGGTCTTAGGACAAATAGGGCCACTGGTGCTGGCTATTGGAAGGCCACAGGCAAAGACAAAGAGATATACAAGGCAAAGGCACTTATTGGAATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCAAATGGTGAAAAAACAAATTGGGTCATGCATGAATACAGATTAGAGGATAAACATCCTATGCATAATCTACCCCAAAAGGCTATGAGTGATTGGGCGATATGCAGGATTTTTCAGAAGATTAACTTTGGAAAGAAAATGCAAATTTCTGGGTTGGTGAGGTTCAGCTCCTTTGGAAAGGACATGCCTTCGTTGATGGATTCTTCTCCATACAACAACTACGAAACAAAAACTGTGATGGAAGAGTCATCGCATGTTTCCAGTTTCTCTGATCCAAATCAAAGTGAGGATCAAAGGACACATAATGACATAGATAATAGCTTTGAAACTCCTAAGTTGGCATCTTCATATTCTTCAAACCACTCTGATATTTCCCCTGCCTCAGGGACTTATACCAAAACTGCCCCTACTTTGTCCCACCAATCCACACAAACTGCACACCAAGATTGGAATTCAGATTATTTCATGGTTCAGGAACAGTCCATGTTGAGGATGTTGATTGAAAACCATGGATCAAGTACAAGCCAGAAAACTCAGAAAGATCAGGATAAAGACTTTGATGTTGACATGTCCTATGTGATGTACAACAACGAAATGTTTCAAAGATCATTTGGGAATCAGGAATATTCACCAGTTTCTGTAGGACATGTAGATACTGGAGGCCTGTGGAATTTTTAG 867 0.4014 MAKMGEREWYFFCVRDKKYPTGLRTNRATGAGYWKATGKDKEIYKAKALIGMKKTLVFYKGRAPNGEKTNWVMHEYRLEDKHPMHNLPQKAMSDWAICRIFQKINFGKKMQISGLVRFSSFGKDMPSLMDSSPYNNYETKTVMEESSHVSSFSDPNQSEDQRTHNDIDNSFETPKLASSYSSNHSDISPASGTYTKTAPTLSHQSTQTAHQDWNSDYFMVQEQSMLRMLIENHGSSTSQKTQKDQDKDFDVDMSYVMYNNEMFQRSFGNQEYSPVSVGHVDTGGLWNF* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0209 288 Gene3D NAC domain 1 107 IPR036093 GO:0003677|GO:0006355
Apr6g0209 288 MobiDBLite consensus disorder prediction 170 208 - -
Apr6g0209 288 SUPERFAMILY NAC domain 3 103 IPR036093 GO:0003677|GO:0006355
Apr6g0209 288 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 2 281 - -
Apr6g0209 288 MobiDBLite consensus disorder prediction 145 208 - -
Apr6g0209 288 ProSiteProfiles NAC domain profile. 1 103 IPR003441 GO:0003677|GO:0006355
Apr6g0209 288 Pfam No apical meristem (NAM) protein 3 78 IPR003441 GO:0003677|GO:0006355
Apr6g0209 288 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0209 Apr-Chr6 2220101 2221497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0209 1 288 NAC Transcription Factor Family AT5G61430 48.980 1.15e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr6g0209 NAM 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0209 - - aprc:113867791 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0209 6 2220101 2221497 Apr6g0209 6 2220101 2221497 ECH