Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr6g0206 | ATGTCTCATCTTGGCCTTTTATTTCTGGGATGTATCTTCATGATCTCTTATGCTAATGCTTATGGAAACATTGGAGGATGGACTAATGCACATGCCACATTCTATGGAGGCAATGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGAAACTTGTACAGTCAAGGTTATGGGACTAACACAGCAGCACTCAGCACTGCCTTATTCAACAATGGCTTGAGCTGTGGAGCATGCTACGAAATTAAATGTGTAAATGATCCACAATGGTGCCTCCCTGGCTTCATTGTAGTCACTGCCACTAATTTCTGCCCTCCTGGTGGTTGGTGTGATCCTCCCAATCACCATTTTGATCTATCTCAACCTGTTTTTCAGCAAATTGCTCAATATAAAGCTGGTATTGTTCCTGTAGCTTACAGAAGGGTAAGGTGCAGAAGAAGAGGTGGAATCAGGTTCACCATCAATGGTCATTCTTACTTCAATTTAGTCCTAGTGACTAATGTTGGTGGTGCTGGTGATGTGCATTCTGTAGCCATAAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGAAATTGGGGCCAAAATTGGCAGAGCAACTCCTACCTGAATGGGCAAAGCCTTTCATTTGTAGTCACCACTAGTGATGGTCTCAGTGTGATCTCATACAATGCTGCACCACCTAATTGGGCCTTTGGACAGACCTACACTGGCAGACAGTTCCGCTACTAA | 732 | 0.444 | MSHLGLLFLGCIFMISYANAYGNIGGWTNAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDPQWCLPGFIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYKAGIVPVAYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSDGLSVISYNAAPPNWAFGQTYTGRQFRY* | 244 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr6g0206 | 243 | PRINTS | Expansin/Lol pI family signature | 26 | 41 | IPR007118 | GO:0005576 | |
Apr6g0206 | 243 | PRINTS | Expansin/Lol pI family signature | 44 | 62 | IPR007118 | GO:0005576 | |
Apr6g0206 | 243 | PRINTS | Expansin/Lol pI family signature | 66 | 84 | IPR007118 | GO:0005576 | |
Apr6g0206 | 243 | PRINTS | Expansin/Lol pI family signature | 132 | 148 | IPR007118 | GO:0005576 | |
Apr6g0206 | 243 | PRINTS | Expansin/Lol pI family signature | 186 | 200 | IPR007118 | GO:0005576 | |
Apr6g0206 | 243 | PRINTS | Expansin/Lol pI family signature | 224 | 238 | IPR007118 | GO:0005576 | |
Apr6g0206 | 243 | Pfam | Lytic transglycolase | 62 | 139 | IPR009009 | - | |
Apr6g0206 | 243 | PANTHER | EXPANSIN-A15 | 6 | 242 | IPR002963 | GO:0009664 | |
Apr6g0206 | 243 | PANTHER | EXPANSIN | 6 | 242 | - | - | |
Apr6g0206 | 243 | SUPERFAMILY | PHL pollen allergen | 146 | 238 | IPR036749 | - | |
Apr6g0206 | 243 | Gene3D | - | 149 | 241 | IPR036749 | - | |
Apr6g0206 | 243 | PRINTS | Expansin signature | 57 | 71 | IPR002963 | GO:0009664 | |
Apr6g0206 | 243 | PRINTS | Expansin signature | 84 | 95 | IPR002963 | GO:0009664 | |
Apr6g0206 | 243 | PRINTS | Expansin signature | 96 | 106 | IPR002963 | GO:0009664 | |
Apr6g0206 | 243 | PRINTS | Expansin signature | 107 | 124 | IPR002963 | GO:0009664 | |
Apr6g0206 | 243 | PRINTS | Expansin signature | 124 | 137 | IPR002963 | GO:0009664 | |
Apr6g0206 | 243 | PRINTS | Expansin signature | 148 | 160 | IPR002963 | GO:0009664 | |
Apr6g0206 | 243 | PRINTS | Expansin signature | 160 | 181 | IPR002963 | GO:0009664 | |
Apr6g0206 | 243 | PRINTS | Expansin signature | 195 | 216 | IPR002963 | GO:0009664 | |
Apr6g0206 | 243 | PRINTS | Expansin signature | 224 | 240 | IPR002963 | GO:0009664 | |
Apr6g0206 | 243 | SUPERFAMILY | Barwin-like endoglucanases | 26 | 167 | IPR036908 | - | |
Apr6g0206 | 243 | SMART | dpbb_1 | 62 | 139 | IPR007112 | - | |
Apr6g0206 | 243 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 159 | 238 | IPR007117 | - | |
Apr6g0206 | 243 | Gene3D | - | 14 | 145 | IPR036908 | - | |
Apr6g0206 | 243 | Pfam | Expansin C-terminal domain | 150 | 227 | IPR007117 | - | |
Apr6g0206 | 243 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 45 | 149 | IPR007112 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr6g0206 | Apr-Chr6 | 2171435 | 2172743 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr6g0206 | 27 | 243 | Expansin Gene Family | AT3G29030 | 83.486 | 2.47e-138 | 387 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr6g0206 | - | K20628 | gmx:100799370 | 457.603 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Apr6g0206 | 6 | 2171435 | 2172743 | Apr1g0928 | 1 | 13070199 | 13072223 | ECH | |
Apr6g0206 | 6 | 2171435 | 2172743 | Apr9g2993 | 9 | 36806866 | 36809111 | ECH | |
Apr6g0206 | 6 | 2171435 | 2172743 | Apr6g0206 | 6 | 2171435 | 2172743 | ECH | |
Apr7g1505 | 7 | 22239167 | 22241129 | Apr6g0206 | 6 | 2171435 | 2172743 | ECH | |
Apr3g0928 | 3 | 24200278 | 24202378 | Apr6g0206 | 6 | 2171435 | 2172743 | ECH |