Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0206 ATGTCTCATCTTGGCCTTTTATTTCTGGGATGTATCTTCATGATCTCTTATGCTAATGCTTATGGAAACATTGGAGGATGGACTAATGCACATGCCACATTCTATGGAGGCAATGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGAAACTTGTACAGTCAAGGTTATGGGACTAACACAGCAGCACTCAGCACTGCCTTATTCAACAATGGCTTGAGCTGTGGAGCATGCTACGAAATTAAATGTGTAAATGATCCACAATGGTGCCTCCCTGGCTTCATTGTAGTCACTGCCACTAATTTCTGCCCTCCTGGTGGTTGGTGTGATCCTCCCAATCACCATTTTGATCTATCTCAACCTGTTTTTCAGCAAATTGCTCAATATAAAGCTGGTATTGTTCCTGTAGCTTACAGAAGGGTAAGGTGCAGAAGAAGAGGTGGAATCAGGTTCACCATCAATGGTCATTCTTACTTCAATTTAGTCCTAGTGACTAATGTTGGTGGTGCTGGTGATGTGCATTCTGTAGCCATAAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGAAATTGGGGCCAAAATTGGCAGAGCAACTCCTACCTGAATGGGCAAAGCCTTTCATTTGTAGTCACCACTAGTGATGGTCTCAGTGTGATCTCATACAATGCTGCACCACCTAATTGGGCCTTTGGACAGACCTACACTGGCAGACAGTTCCGCTACTAA 732 0.444 MSHLGLLFLGCIFMISYANAYGNIGGWTNAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDPQWCLPGFIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYKAGIVPVAYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSDGLSVISYNAAPPNWAFGQTYTGRQFRY* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0206 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Apr6g0206 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Apr6g0206 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Apr6g0206 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Apr6g0206 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Apr6g0206 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Apr6g0206 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Apr6g0206 243 PANTHER EXPANSIN-A15 6 242 IPR002963 GO:0009664
Apr6g0206 243 PANTHER EXPANSIN 6 242 - -
Apr6g0206 243 SUPERFAMILY PHL pollen allergen 146 238 IPR036749 -
Apr6g0206 243 Gene3D - 149 241 IPR036749 -
Apr6g0206 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Apr6g0206 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Apr6g0206 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Apr6g0206 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Apr6g0206 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Apr6g0206 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Apr6g0206 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Apr6g0206 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Apr6g0206 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Apr6g0206 243 SUPERFAMILY Barwin-like endoglucanases 26 167 IPR036908 -
Apr6g0206 243 SMART dpbb_1 62 139 IPR007112 -
Apr6g0206 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Apr6g0206 243 Gene3D - 14 145 IPR036908 -
Apr6g0206 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Apr6g0206 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0206 Apr-Chr6 2171435 2172743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0206 27 243 Expansin Gene Family AT3G29030 83.486 2.47e-138 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0206 - K20628 gmx:100799370 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0206 6 2171435 2172743 Apr1g0928 1 13070199 13072223 ECH
Apr6g0206 6 2171435 2172743 Apr9g2993 9 36806866 36809111 ECH
Apr6g0206 6 2171435 2172743 Apr6g0206 6 2171435 2172743 ECH
Apr7g1505 7 22239167 22241129 Apr6g0206 6 2171435 2172743 ECH
Apr3g0928 3 24200278 24202378 Apr6g0206 6 2171435 2172743 ECH