Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0199 ATGGAGATAATAACAAACGCCAACACCAACATCAACACCACCAACGCCAACACCCCAACAGGTGCAAAGTCGCCAGAACCTGAATCCGAGACTCCGACCCGGATCCACCAACCCGGATCCACAAACACAAAGCCCTTATCTTTTTCCAATGGAGTCTTAAAGCGCCACCACCCTCTCCAACACCACAACCCCCACCACCATGCAAACCAACCCATCACTGTCACCTACAAGGAATGCTTGAAGAACCACGTCGCAAGCTTAGGTGGCCACGCCTTGGACGGTTGCGGCGAGTTCATGCCCTCGCCGGCAGCCACCGCCGACGACCCAAGTTCCATCAAATGTGCCGCCTGTGGCTGCCACCGGAACTTCCACCGCCGGGAACCGGATGAACCACCCATTTCTCCGGTGACCCATCATGTGCTGGAGTACCAGCCCCACCACCGCCACCACCCTCCGCCGCCACCGCCGCCTTATCGGAGCCCCAATTCCGCGTCTCCGCCGCCGATTTCGTCCTACCCATCAGCACCCCACATGCTCCTCGCCCTCTCCGGCGGCGGGCTCCCCATCCCGCCAGAAAACACCGCCGCGCCGGCGATGGGTTCTCACTCCCGGAAACGGTTCAGGACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCTGAGAAAGTGGGGTGGAAGATGCAGAAGAGAGATGAAGAAATGGTTATGGAGTTTTGCAATGAGGTTGGTGTGGATAGAGGGGTCCTCAAGGTTTGGATGCACAACAACAAGAACACTTTTGGGAAGAGAGATAACGGTAACGTTAACGCCAACGGCACCGCTCCAAATGTTCTCGAACATGGCAGCACTATTAACGGCGGAATTAACGGTAACGGTAACGGTAACGATGAAGAGGAGAACAACGATAACCATAACAACATCAACCTCGGTTCCCAGGATCCGAATCAGTACGAGAATGATAGTGGGACTAACGTTGGTACTAATGGGTCTTCTTCTTCTTCTTGA 1014 0.5523 MEIITNANTNINTTNANTPTGAKSPEPESETPTRIHQPGSTNTKPLSFSNGVLKRHHPLQHHNPHHHANQPITVTYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPDEPPISPVTHHVLEYQPHHRHHPPPPPPPYRSPNSASPPPISSYPSAPHMLLALSGGGLPIPPENTAAPAMGSHSRKRFRTKFTQEQKEKMHEFAEKVGWKMQKRDEEMVMEFCNEVGVDRGVLKVWMHNNKNTFGKRDNGNVNANGTAPNVLEHGSTINGGINGNGNGNDEEENNDNHNNINLGSQDPNQYENDSGTNVGTNGSSSSS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0199 337 MobiDBLite consensus disorder prediction 144 177 - -
Apr6g0199 337 MobiDBLite consensus disorder prediction 266 337 - -
Apr6g0199 337 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 76 127 IPR006456 -
Apr6g0199 337 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 7 289 - -
Apr6g0199 337 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 75 127 IPR006456 -
Apr6g0199 337 MobiDBLite consensus disorder prediction 266 299 - -
Apr6g0199 337 Gene3D - 191 264 - -
Apr6g0199 337 MobiDBLite consensus disorder prediction 150 173 - -
Apr6g0199 337 MobiDBLite consensus disorder prediction 1 50 - -
Apr6g0199 337 SUPERFAMILY Homeodomain-like 194 265 IPR009057 -
Apr6g0199 337 Pfam ZF-HD protein dimerisation region 74 128 IPR006456 -
Apr6g0199 337 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 7 289 - -
Apr6g0199 337 MobiDBLite consensus disorder prediction 307 337 - -
Apr6g0199 337 MobiDBLite consensus disorder prediction 1 49 - -
Apr6g0199 337 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 204 261 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0199 Apr-Chr6 2084043 2085663 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0199 10 260 ZF-HD Transcription Factor Family AT5G15210 53.125 1.44e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr6g0199 ZF-HD_dimer 7.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0199 - - ccaj:109793219 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0199 6 2084043 2085663 Apr4g2446 4 33410466 33412288 PCT