Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0198 ATGCCAGTTTCTGATTTCAATTCACCAAACCCCCTTAAAAATTTTCATATAATCTTTTCAGGGTTTGAAGCAGGCAAAGGTAGAGAAGAATTTAAGGATACTAGGTGTAAAATGAGGAAGCGTCAAGTAGTTGTGAGAAGAGAAGAACCTCAAAGAAGTGTTAGGAGTGTGAAATATGGTGAGTGCCAAAAGAATCACGCGGCTAATGTTGGAGGGTATGCTGTTGATGGCTGCAGAGAGTTCATGGCCAGTGGTGGAGAAGGGACAAGTGCTGCTCTCACTTGTGCTGCGTGTGGATGCCACAGAAACTTCCACAAAAGAGAGGTTGAAACTGAAGTAGTGTGTGAGTGCTCCTCACCTCCCTCCAATGGAACCTGA 378 0.4444 MPVSDFNSPNPLKNFHIIFSGFEAGKGREEFKDTRCKMRKRQVVVRREEPQRSVRSVKYGECQKNHAANVGGYAVDGCREFMASGGEGTSAALTCAACGCHRNFHKREVETEVVCECSSPPSNGT* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0198 125 PANTHER BNAA09G44460D PROTEIN 53 120 - -
Apr6g0198 125 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Apr6g0198 125 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Apr6g0198 125 Pfam ZF-HD protein dimerisation region 57 109 IPR006456 -
Apr6g0198 125 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 53 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0198 Apr-Chr6 2061116 2061494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0198 38 124 Zinc finger-homeobox gene family AT3G28917 70.707 7.39e-43 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr6g0198 ZF-HD_dimer 6.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0198 - - aprc:113868039 240.35