Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0197 ATGGGAAGGCCACCATGTTGTGATAAAGAGGGTGTGAAGAAAGGACCTTGGACTCCAGAAGAAGATATCATATTGGTTTCTTATATACAAGAACATGGTCCTGGAAATTGGAAGGCTGTTCCCACCAATACAGGGTTGTCAAGGTGCAGTAAGAGTTGTAGACTTAGATGGACTAATTACTTGAGGCCAGGAATCAAACGGGGTAACTTCACTGAGCAAGAAGAGAAGATGATAATCCATCTTCAAGCTCTTTTAGGGAACAGATGGGCAGCAATAGCTGCTTACCTACCACAGAGAACAGATAATGACATAAAGAACTACTGGAACACTTATTTGAAAAAGAAGCTGAAGAAATTGGAAGCAGGCTGTGAAGGAAGTTTTGGACATAAAGAGGTTTCAGTTTCTCAGCCAATGTCAAGAGGCCAGTGGGAAAGAAGGCTTCAAACAGATATCCACATGGCTAAGAAAGCACTTAGTGAAGCTCTCTCACCAAACAACACACCTGCCTTATTATTACCTGAACCAAATTCAAACCAATCTAATGATAACAGTGTCTCCTTCTATAATTCCACTAAACAAGCAACACAATCTATAAGCTATGCTTCAAGTGCTGATAACATAGCTCGTTTGTTGAAGGGATGGATGAAGAATGCACCAACAAAAGCCTCACGTGCTGCCTCAGCTGTGACTCAAAATTCCTTCAATAATAACTTGGCTGGTGCTGACACTGCTTCTAGTGAAGGAATAACAAGTGGGGTGGCAAAGGGAAGCACAATAAGCAATAGCGTTGAATTGACTGAGACTTTTGAGTCCTTGTTTGGTTACGAGTCTTTGGATTCTTCAAATTCTGAGTTCTCACAATCTCTCTCACCTGAGGCTACTCTTTTCCAAGATGAGAGCAAGCCAGATGCTACTGAAACTGATCAAATTCCCTTTTCTTTGCTTGAAAAATGGCTTTTGGATGATGCTAATTGTCAAGAAAAACTTTGCTTCTAG 996 0.4106 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLKKLEAGCEGSFGHKEVSVSQPMSRGQWERRLQTDIHMAKKALSEALSPNNTPALLLPEPNSNQSNDNSVSFYNSTKQATQSISYASSADNIARLLKGWMKNAPTKASRAASAVTQNSFNNNLAGADTASSEGITSGVAKGSTISNSVELTETFESLFGYESLDSSNSEFSQSLSPEATLFQDESKPDATETDQIPFSLLEKWLLDDANCQEKLCF* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0197 331 Gene3D - 13 66 - -
Apr6g0197 331 CDD SANT 16 61 IPR001005 -
Apr6g0197 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr6g0197 331 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 329 - -
Apr6g0197 331 SMART sant 13 63 IPR001005 -
Apr6g0197 331 SMART sant 66 114 IPR001005 -
Apr6g0197 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr6g0197 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr6g0197 331 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr6g0197 331 Gene3D - 69 132 - -
Apr6g0197 331 CDD SANT 69 111 IPR001005 -
Apr6g0197 331 MobiDBLite consensus disorder prediction 283 304 - -
Apr6g0197 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr6g0197 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Apr6g0197 331 MobiDBLite consensus disorder prediction 165 186 - -
Apr6g0197 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 329 - -
Apr6g0197 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0197 Apr-Chr6 2016227 2017837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0197 1 322 MYB Transcription Factor Family AT5G62470 51.240 3.25e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr6g0197 Myb_DNA-binding 5.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0197 K09422 - gmx:780542 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0197 6 2016227 2017837 Apr4g2444 4 33374835 33376568 PCT