Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0195 ATGGAGGAAAGGAATGAAATGGATAGGATTGATGATATGCCCGGTTTTCGTTTTCACCCCACAGATGAGGAGCTTGTAGAATTTTACCTGAAGAGAAAAATTCAGCAGAAGTCTCTTCCTATTGAACTCATTAAGCAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAAGCTGGCTGGTACTGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGGGATAGAAAATACAGGAACAGTGCACGTCCTAATAGAGTCACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGATAGGCCTATATACTCCTCTGAAGGAAGGTGCATTGGTTTGAAGAAATCCCTTGTGTTCTACAGAGGTAGAGCTGCCAAAGGGATGAAAACTGATTGGATGATGCATGAGTTTAGGCTACCTTGCATTTCAGGCTCAGCCTCTCCCAAAAAAGTCCCGGACAAAAGCCTCCCTTCAAGTGATTCATGGGCAATCTGTAGGATATTCAAGAAGACCAACTCCTTGTCCATGGCACAGAAAGCATTATCTCACCCTTGGATTTCTCAGTTACCTGGAAGCATGGTATCTGACATACTCACACATGGTGCAAACTGCCACCAGCTAGGATCATCAGCCATTCAATTTTGCGGTGACAAGCAAGAGTTACACCAAGTCTCCAATGCCAACACCACCAACAACTTCTCAGCTTCAGATATTCCCTCTTACAAACCAATCAGTATCAGCACAGTTTGCAAGCCATCACAAATTCCTGTCTCAGATGGAGACCTTGCTGACAACTTTATATTCTACGCATTAGAAGCAACTGGCCCCACCAAAAGCACACTTGATGCTAGTTCCATGCTTTCTTCCAACCCTGACTATATAGGATTTGAAGAGCCAAACCAACAATATAGTAGTGGCTTCTCAATTAGTCTACCTCATGATATGCAACCAAACATGAACATAGAGACAGGAACAGAAGAACAAGATTGGAGGAAAAACCAAGTTCAAGAACAGCTTAATCAGTGGGAAACAGCTAGTAGAACAATTGGATTTCCCTTCAACGTGCCTCCTACTGTGGCATGGGACTCACCCCTTTGCCCCAGTGAGATTTCCACTACCTATTCCACTAATAAATGTTACACTTAA 1143 0.4331 MEERNEMDRIDDMPGFRFHPTDEELVEFYLKRKIQQKSLPIELIKQVDIYKYDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGRCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISGSASPKKVPDKSLPSSDSWAICRIFKKTNSLSMAQKALSHPWISQLPGSMVSDILTHGANCHQLGSSAIQFCGDKQELHQVSNANTTNNFSASDIPSYKPISISTVCKPSQIPVSDGDLADNFIFYALEATGPTKSTLDASSMLSSNPDYIGFEEPNQQYSSGFSISLPHDMQPNMNIETGTEEQDWRKNQVQEQLNQWETASRTIGFPFNVPPTVAWDSPLCPSEISTTYSTNKCYT* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0195 380 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 1 378 - -
Apr6g0195 380 Pfam No apical meristem (NAM) protein 14 138 IPR003441 GO:0003677|GO:0006355
Apr6g0195 380 ProSiteProfiles NAC domain profile. 12 169 IPR003441 GO:0003677|GO:0006355
Apr6g0195 380 Gene3D NAC domain 21 174 IPR036093 GO:0003677|GO:0006355
Apr6g0195 380 SUPERFAMILY NAC domain 12 169 IPR036093 GO:0003677|GO:0006355
Apr6g0195 380 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0195 Apr-Chr6 1986927 1988922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0195 13 288 NAC Transcription Factor Family AT1G26870 54.608 6.57e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr6g0195 NAM 2.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0195 - - gmx:100777630 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0195 6 1986927 1988922 Apr6g0195 6 1986927 1988922 ECH