Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0189 ATGTCTAGCCGAAGGTCCAGGCAACAATCTGCGTCTACAAGGATCTCTGATGACCAAATCATCGAACTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGTGATAGGCGTTCTGACAAGGTATCGGCATCTAAGGTCCTACAAGAGACCTGTAACTACATCAGAAGCTTACACAGGGAGGTGGATGATTTAAGCGAACGGTTGTCTCAGTTGTTGGCTACAATTGATGCTGATAGTCCTGAGGCTGCTATCATTAGGAGCCTAATTAACCAATAA 279 0.448 MSSRRSRQQSASTRISDDQIIELVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSQLLATIDADSPEAAIIRSLINQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0189 92 Coils Coil 55 75 - -
Apr6g0189 92 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
Apr6g0189 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Apr6g0189 92 Pfam Helix-loop-helix DNA-binding domain 22 59 IPR011598 GO:0046983
Apr6g0189 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Apr6g0189 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 78 IPR036638 GO:0046983
Apr6g0189 92 CDD bHLH_AtPRE_like 9 75 - -
Apr6g0189 92 Gene3D - 2 84 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0189 Apr-Chr6 1895836 1897432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0189 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 75.000 4.40e-37 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr6g0189 HLH 3.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0189 - - gmx:100794486 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0189 6 1895836 1897432 Apr1g0901 1 12215097 12216332 ECH
Apr6g0189 6 1895836 1897432 Apr6g0189 6 1895836 1897432 ECH
Apr7g1491 7 22034125 22034783 Apr6g0189 6 1895836 1897432 ECH
Apr3g0899 3 23237889 23239006 Apr6g0189 6 1895836 1897432 ECH
Apr6g0189 6 1895836 1897432 Apr4g2441 4 33337960 33338940 PCT